rs224051078 SNP Detail

Summary

• ID
  rs224051078
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:73948459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCGGAGCG AAAAGGCCCG GGGCCACCCC
  CCACCCCCGA GCCAGGCCCT CCGCTCGGCG CCTTACCGGA CGCCTGGCCC GTGCCAGGTG
  GTGCAGCAAG CAGAGAGGCC GCGGCGCTAC AGCCGGAGAT GCTCGGCCCT GGCGCCACCC
  K
  GCCAGCCTCC CGCGAGCTCC TGGCAGCCGG CGCCAGCTCC GGCTCGCTCT GCCGGGGACC
  CGCCCCACAC GCGCAGAGGT AGCGGAGAAA GAGGCGCGGG CCGGTGCCGG GCTGACCGAC
  AGGCACGCGG GCCAATGGGA GGCTCGGAGC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325684969	CHEV_18_73975042	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224051078					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:73948459 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10208	CpG island 10208	within coordinates
Gm58443	predicted gene, 58443	169 bp upstream
Gm58445	predicted gene, 58445	577 bp downstream
Me2	malic enzyme 2, NAD(+)-dependent, mitochondrial	within coordinates
Rr353118	regulatory region 353118	within coordinates
Rr405736	regulatory region 405736	42 bp upstream
Tssr153885	transcription start site region 153885	42 bp downstream
Tssr153886	transcription start site region 153886	82 bp downstream
Tssr153887	transcription start site region 153887	315 bp downstream
Tssr153888	transcription start site region 153888	367 bp downstream
Tssr153889	transcription start site region 153889	1115 bp downstream