rs224061401 SNP Detail

Summary

• ID
  rs224061401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:112064252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCCTCT CTCTCCTCTT
  CTCTCCTCTC CTCTCTCTCT CTCCGCTCTC TTCTCTCCTT TCTCTCTTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCCCT CGCTCGCAGG ATTTCGATCT CTCTGGCTGA
  GTAGGTCCAC CTGAGGGTCA CTCTCGCAGT CCCGCCGGAG TCAGCCAGCC TCAGTGGTGC
  Y
  CCCGACCGCC CCACCCGGCC ATGCCCTCCC ACAGGGCTGG CTAGGCTCCC AGGCAGCGCC
  CAGCTCCTCC CCGCCAGCCA AAGACGCGTC CAGCCGGGCG GGCACCAAGA GCACCGAAAG
  CATTGCACAT GCCCGCCCCC CTCCCCCCAA TAGTTCCTGC CCCAAGACCC GTGCTGGCGA
  CCCCTCTGCG GAGGGAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378948997	MGP_WTSI_9_112137688	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224061401					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378948997	MGP_WTSI_9_112137688	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112064252 () rs orientation: forward

Symbol	Name	Function Class
2900079G21Rik	RIKEN cDNA 2900079G21 gene	within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21	within coordinates
Cpgi22409	CpG island 22409	within coordinates
Gm68368	predicted gene, 68368	within coordinates
Rr687421	regulatory region 687421	851 bp distal
Rr687422	regulatory region 687422	177 bp distal
Rr687423	regulatory region 687423	within coordinates
Tssr87517	transcription start site region 87517	933 bp downstream
Tssr87518	transcription start site region 87518	871 bp downstream
Tssr91799	transcription start site region 91799	1930 bp upstream
Tssr91800	transcription start site region 91800	1915 bp upstream
Tssr91801	transcription start site region 91801	1898 bp upstream
Tssr91802	transcription start site region 91802	1861 bp upstream
Tssr91803	transcription start site region 91803	1772 bp upstream
Tssr91804	transcription start site region 91804	1614 bp upstream
Tssr91805	transcription start site region 91805	565 bp upstream
Tssr91806	transcription start site region 91806	540 bp upstream
Tssr91807	transcription start site region 91807	362 bp upstream
Tssr91808	transcription start site region 91808	326 bp upstream
Tssr91809	transcription start site region 91809	281 bp upstream
Tssr91810	transcription start site region 91810	217 bp upstream
Tssr91811	transcription start site region 91811	within coordinates
Tssr91812	transcription start site region 91812	268 bp downstream
Tssr91813	transcription start site region 91813	327 bp downstream
Tssr91814	transcription start site region 91814	646 bp downstream
Tssr91815	transcription start site region 91815	670 bp downstream
Tssr91816	transcription start site region 91816	705 bp downstream
Tssr91817	transcription start site region 91817	716 bp downstream
Tssr91818	transcription start site region 91818	735 bp downstream
Tssr91819	transcription start site region 91819	756 bp downstream
Tssr91820	transcription start site region 91820	782 bp downstream