rs224064031 SNP Detail

Summary

• ID
  rs224064031
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4166396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agttcaaat ccccagcacc cattcaaaaa
  cccTCTAAGC CCAGCACGGA AGAGGGCAGG GGCAAGAAGA CAGCTGGGGC TTATTCCTTT
  GAATAAGAGA CCTCTCTCAT TTCAAGAATA AAGTGGAGAA TAATCTAGGG GGTTACCCTA
  R
  CATACTCGAA TGCAACACAC TACATGCCTG CTCTAACACA TGCAACATGG AGATTTTAAT
  GCCCCTGTAG CCTTGGCTTG CTCTGAGACC TTCAGCGAGT CACATCCCCC TGCAACCTAG
  GTGTCCTTTT GCACACTCAG CTCTAAGCTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322093636	CHEV_7_4114999	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224064031					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4166396 () rs orientation: forward

Symbol	Name	Function Class
Cdc42ep5	CDC42 effector protein 5	within coordinates
Gm73056	predicted gene, 73056	455 bp upstream
Rr641923	regulatory region 641923	within coordinates
Rr641924	regulatory region 641924	466 bp proximal
Rr641925	regulatory region 641925	1453 bp proximal
Tssr70452	transcription start site region 70452	850 bp downstream
Tssr70453	transcription start site region 70453	1104 bp downstream
Tssr70454	transcription start site region 70454	1264 bp downstream
Tssr70455	transcription start site region 70455	1287 bp downstream
Tssr70456	transcription start site region 70456	1323 bp downstream
Tssr70457	transcription start site region 70457	1399 bp downstream
Tssr70458	transcription start site region 70458	1629 bp downstream