rs224069371 SNP Detail

Summary

• ID
  rs224069371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74722976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCGCTCC CGGCAGATCT
  ACGCGCTGCT TGGGGCGGAG GCGGCCTTTG CAGAATGAAA TGACATCGCG TGTCTTATGA
  TCCTGGCCAG CCCCGCCTGA CCCCGCCTCC CAGAGCTGGG CTGGGTCGCA CGTCTAGCTT
  TGGCTGAGAG CTGCGCTGAT TGGGTGCATG TGAGTGTCCC GCGGGTCGCT GGGGGCAGCC
  Y
  TAGGCCCCCC TGCCTTGCCC TGCTTTAGCC GGTGTGGAAT GTGGCGTGTC TGCGCGTTTC
  AAACCCGCTC TTGGCTGGAA TGTTGCGTGT GCCTGCGTCC CAAGCCCGTT GGTTACCCGG
  ACTGCTGACG TAGTCAGGCC CCGCCCCCGA CCACGTGCAC GGGGGACACT CCCGCTGGGG
  ACTGTGCGGC CCGGCCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383889000	MGP_WTSI_11_74645652	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224069371					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383889000	MGP_WTSI_11_74645652	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74722976 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3246	CpG island 3246	within coordinates
Cpgi3247	CpG island 3247	587 bp proximal
Gm74357	predicted gene, 74357	1335 bp upstream
Mnt	max binding protein	within coordinates
Rr402717	regulatory region 402717	1619 bp downstream
Rr450977	regulatory region 450977	1220 bp distal
Rr450978	regulatory region 450978	1153 bp distal
Rr450979	regulatory region 450979	912 bp distal
Rr450980	regulatory region 450980	1994 bp proximal
Tssr102911	transcription start site region 102911	1247 bp downstream
Tssr102912	transcription start site region 102912	1230 bp downstream
Tssr102913	transcription start site region 102913	1145 bp downstream
Tssr102914	transcription start site region 102914	872 bp downstream
Tssr109145	transcription start site region 109145	1461 bp upstream
Tssr109146	transcription start site region 109146	346 bp upstream
Tssr109147	transcription start site region 109147	140 bp upstream
Tssr109148	transcription start site region 109148	32 bp downstream
Tssr109149	transcription start site region 109149	69 bp downstream