rs224073084 SNP Detail

Summary

• ID
  rs224073084
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131455213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTTAGCG TTCTCCTCCC
  CGCCACCCTC TTCTACGCAG TTCGGCCCCC CAGTTCCCTA AGGAGACTCC GCCAACTCCG
  CAAGACCCCG CCGGGAAGCT GAACCCACCC CTTTGCCAAT CACCGCCCGC CTAATAGCGA
  CTGACGGGGA CTATAGCCAA TAGGAACAAC TGATCCATAG ACGCCAGGAG TAGAGGCGGG
  R
  CTGACGAAAC TTAGAGGTGT GGCGAACACT AGCTGCCTAG GCGCAGTCCT AGAGTGAGCT
  CCTCCCCGGC CTGTGGAAGC CTAAAGTAAA GCTGATGGGC GGGATAAAAT GGAAGCGACA
  GCCAAACACA AACTCTCAAG AGAAGACGGG ACCAATCGGA CCGGGAAAGG GAGGAGGGAA
  GTTCAGCCAA TAAATAGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351452115	MGP_WTSI_1_133424052	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224073084					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351452115	MGP_WTSI_1_133424052	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131455213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Fam72a	family with sequence similarity 72, member A	428 bp upstream
Gm70877	predicted gene, 70877	within coordinates
Rr396286	regulatory region 396286	within coordinates
Rr396287	regulatory region 396287	118 bp upstream
Rr418129	regulatory region 418129	841 bp distal
Rr418130	regulatory region 418130	1226 bp distal
Rr418131	regulatory region 418131	139 bp distal
Rr418132	regulatory region 418132	within coordinates
Rr418133	regulatory region 418133	659 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	123 bp upstream
Tssr8629	transcription start site region 8629	383 bp upstream
Tssr8630	transcription start site region 8630	426 bp upstream
Tssr8631	transcription start site region 8631	505 bp upstream
Tssr8632	transcription start site region 8632	886 bp upstream
Tssr13594	transcription start site region 13594	1937 bp upstream
Tssr13595	transcription start site region 13595	1890 bp upstream
Tssr13596	transcription start site region 13596	1857 bp upstream
Tssr13597	transcription start site region 13597	1628 bp upstream
Tssr13598	transcription start site region 13598	927 bp upstream
Tssr13599	transcription start site region 13599	885 bp upstream
Tssr13600	transcription start site region 13600	730 bp upstream
Tssr13601	transcription start site region 13601	182 bp upstream
Tssr13602	transcription start site region 13602	90 bp upstream
Tssr13603	transcription start site region 13603	48 bp downstream