rs224076040 SNP Detail

Summary

• ID
  rs224076040
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76303133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCAAATGC TGTCTTTTTT
  TCTCTTTCAC CCCGCCGGCT TCACTTCCAA GGTATCGCAC AGGCAAGGCA AGCGCCGCAC
  CACTCAGCTA CTACGCCAGC GCTCGCTTGC TCTACCCTTT AACAGCCTAC CTATCCGTCC
  TGGCGCTAAA GTTACTTTTC AGTTTGGCTC TTGTGTGCTG ACCCTATTCC ATATTCCGTC
  W
  GACCACCTGT TCTGGCCGTG CAGATTTAAA TGCTTAACTA GTGGGAATGT TTGCCAAGTG
  TCGTCCCAGA GAGTAGCACC CTTTTGCTGT TTGGGAGAGA GGGCTGGGAA TTGAGCCCCT
  AAGTGTGGAG CCCGAAAGTG TGCATAACAT CTGGGCTACA TTCCTTGCTT TTTGTTTAGG
  GAGTGAGTGT TGGGGACTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104772	CHEV_12_77357346	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224076040					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76303133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	692 bp distal
Gm47525	predicted gene, 47525	622 bp upstream
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	within coordinates
Rr403350	regulatory region 403350	1013 bp downstream
Rr468112	regulatory region 468112	936 bp distal
Rr468113	regulatory region 468113	132 bp distal
Tssr113934	transcription start site region 113934	1120 bp downstream
Tssr113935	transcription start site region 113935	1102 bp downstream
Tssr113936	transcription start site region 113936	1052 bp downstream
Tssr113937	transcription start site region 113937	1022 bp downstream
Tssr113938	transcription start site region 113938	990 bp downstream
Tssr113939	transcription start site region 113939	923 bp downstream
Tssr113940	transcription start site region 113940	887 bp downstream
Tssr113941	transcription start site region 113941	865 bp downstream
Tssr116711	transcription start site region 116711	1302 bp upstream
Tssr116712	transcription start site region 116712	1249 bp upstream