rs224084819 SNP Detail

Summary

• ID
  rs224084819
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26496717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCACGTT CTTCTTGGTA
  TTTCATTCTT CCCTTGGGAG GGTCTCCGTT GGGATTGTTG GGATTTGTTA CCCTCTCCTT
  CTTCCCCCTG TACTGTTCTG CCCTCGCATA TGTAACAGTT CTCAGTAGAT TCCTCACAAG
  AGCTAAGGTA ACCCCATTTT ACTGATGTGT AGATGAGGTA AGATACCAGC CAGGGAGTGA
  Y
  GGAGGAGGAG GAGGCTGGCC CCACAGACCA GCCAGGGTTT GGAGACTACC CTGCCCTTCT
  GGGCCCAAGG GAAGTGGTGG CAGCTTGAAG AAGGGCTTTG GTTAAGTCTG CGGCCTCCCC
  AGAGGCAGGG CAGTTTGTTT GCCTCTAAGA GAGGCAGTCT CTTGACTTCT CTTCAGCCTC
  TTCCCCCTTT TAGCCCACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353433510	MGP_WTSI_2_26462225	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224084819					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353433510	MGP_WTSI_2_26462225	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26496717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11355	CpG island 11355	1805 bp distal
Gm20532	predicted gene 20532	within coordinates
Gm39772	predicted gene, 39772	400 bp downstream
Rr42175	regulatory region 42175	917 bp distal
Rr42176	regulatory region 42176	484 bp proximal
Rr56481	regulatory region 56481	1716 bp distal
Tssr23142	transcription start site region 23142	1109 bp downstream
Tssr23143	transcription start site region 23143	1280 bp downstream
Tssr23144	transcription start site region 23144	1361 bp downstream
Tssr23145	transcription start site region 23145	1447 bp downstream
Tssr23146	transcription start site region 23146	1467 bp downstream
Tssr23147	transcription start site region 23147	1549 bp downstream
Tssr23148	transcription start site region 23148	1914 bp downstream
Tssr23149	transcription start site region 23149	1965 bp downstream