rs224088434 SNP Detail

Summary

• ID
  rs224088434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10611519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTAAAGTT TCTCTTCACT
  TTATGATTAG TGGACAACTA GTGATGTTTT CTTAGTTGGA TGATTCAGTT TCTCTTCACT
  AGTTTTGGAT ACACGTGTAC ATATTCTTAC AAAGTAGACC TAAGTAAGGC CAGTATTCTG
  CTCTGTTAGC TTTACATACG AGCATAAAAA TCCCTGTCAC ACCATTTGAA ATCATAGGTA
  Y
  TTATTGTTGG TAAAGAAGTT GTTTGAAGCC AGGAATTATA TTAGTGAACC AGCCGACTTC
  CATGTTAGAC TTGAAAGAGC CAAAGAACCA TCTTATAGTA AAGACAAGCT AGACTCACTC
  CTCTTTATGA TTGATTAAGC CTGTTTCTCA AGGATTGCGC TATGCCCCAC CTGTAGCCTT
  AACTACAAAT GGTTCAGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399684662	MGP_WTSI_18_10611517	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224088434					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399684662	MGP_WTSI_18_10611517	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10611519 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	871 bp distal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	1167 bp upstream
Rr533778	regulatory region 533778	1421 bp distal
Rr533779	regulatory region 533779	1743 bp distal
Rr533780	regulatory region 533780	677 bp distal
Rr533781	regulatory region 533781	1383 bp distal
Rr533782	regulatory region 533782	1077 bp distal
Tssr152429	transcription start site region 152429	1403 bp upstream
Tssr152430	transcription start site region 152430	1375 bp upstream
Tssr152431	transcription start site region 152431	1231 bp upstream
Tssr152432	transcription start site region 152432	1207 bp upstream
Tssr152433	transcription start site region 152433	1156 bp upstream