rs224097413 SNP Detail

Summary

• ID
  rs224097413
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146204549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAATCAC AATGCTTGGA
  AGGCTGTGGG TTTCGAGGCC AGCCTGGTCT ACATGGAGTT TCAGGCCAGC CAGAACTACA
  AAGTGAGACC CTGTCTCAAA CAATATGGTT TGTTCGTTCA CTTTTTAAAT TATGTATTAA
  TTAATGTACG TGTGTGAATG CAAACGTTCC CAGACTCCAG TGAGGGTGAC AGTAGCCCAG
  R
  ACTTGGTGCT TTTGAGTTGC CCAGTGTGGG TGGTGGGAAG TGTGACCTTA GGTCCTCTGC
  ACGAGGGCTC AGTTCCCCAG TCCTCTAACT GCCATCTTCC AGCCTCAGTT TTCGTATTCT
  TTACACATAT AATTTCATTT CGTTTCATTT TTTTTTTCCA AGAAATCCAG GGAGCGTTTT
  AACTTCGGCA GTTTAAACGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360119543	MGP_WTSI_3_146161758	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224097413					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360119543	MGP_WTSI_3_146161758	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146204549 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13920	CpG island 13920	543 bp proximal
Gng5	G protein subunit gamma 5	1042 bp upstream
Rr77342	regulatory region 77342	within coordinates
Rr398118	regulatory region 398118	1598 bp upstream
Spata1	spermatogenesis associated 1	within coordinates
Tssr32351	transcription start site region 32351	911 bp upstream
Tssr32352	transcription start site region 32352	1034 bp upstream
Tssr32353	transcription start site region 32353	1056 bp upstream
Tssr32354	transcription start site region 32354	1277 bp upstream
Tssr32355	transcription start site region 32355	1337 bp upstream
Tssr32356	transcription start site region 32356	1367 bp upstream
Tssr32357	transcription start site region 32357	1395 bp upstream
Tssr36036	transcription start site region 36036	927 bp downstream
Tssr36037	transcription start site region 36037	1013 bp downstream
Tssr36038	transcription start site region 36038	1294 bp downstream