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rs224100186 SNP Detail
Summary
  • ID
    rs224100186
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr5:87843317 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTACAGATTA AGGCCCTTTT
TTTTTAAAGA TACACAAAGC AAGAAAGCAT TGTCTAGGGT AACATGAAGA AAATAAGTGT
TCTTAAGGAG TGTCTCCTAA CCTATTCTAC TTATGGATGG ATTACAGAGT AAAATAAAAC
TGATGTTCAA GAGTTTTCAA AATCGTTTCA CCTTATCCCA AGCCAATTTA CTGGGGGAGT
K
ACACTATTAC ATTCGAGTAT ACTCCATTGT GTGTATGGCT AGCAGTGTGG TATGCTAGTG
GAATGATGCT ATTCTGATGA CTATTAATTT GAAGGCATGC TCTGCTACAT TGCATCACAG
CTTAAGTAGT GTTGCATTCA GTTGTTTCAT ATCTCACTCC TCTTTTTGTG GACTAAAAAT
GTCCTCAAGG CCAGGTAAAC                                            

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss365777306 MGP_WTSI_5_88124483 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224100186 SNP T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss365777306 MGP_WTSI_5_88124483 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:87843317 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Csn2 casein beta within coordinates
D5Mit12 DNA segment, Chr 5, Massachusetts Institute of Technology 12 1480 bp distal
D5Mit16 DNA segment, Chr 5, Massachusetts Institute of Technology 16 1440 bp distal
D5Mit16.1 DNA segment, Chr 5, Massachusetts Institute of Technology 16.1 1283 bp distal
D5Mit16.2 DNA segment, Chr 5, Massachusetts Institute of Technology 16.2 1595 bp distal
Tssr1529 transcription start site region 1529 897 bp downstream
Tssr46883 transcription start site region 46883 947 bp downstream
Tssr46884 transcription start site region 46884 932 bp downstream
Tssr46885 transcription start site region 46885 911 bp downstream
Tssr46886 transcription start site region 46886 881 bp downstream
Tssr46887 transcription start site region 46887 864 bp downstream
Tssr46888 transcription start site region 46888 758 bp downstream
Tssr46889 transcription start site region 46889 739 bp downstream
Tssr46890 transcription start site region 46890 706 bp downstream
Tssr46891 transcription start site region 46891 693 bp downstream
Tssr46892 transcription start site region 46892 664 bp downstream
Tssr46893 transcription start site region 46893 638 bp downstream
Tssr46894 transcription start site region 46894 593 bp downstream
Tssr46895 transcription start site region 46895 573 bp downstream
Tssr46896 transcription start site region 46896 494 bp downstream
Tssr51618 transcription start site region 51618 918 bp upstream
Tssr51619 transcription start site region 51619 884 bp upstream
Tssr51620 transcription start site region 51620 874 bp upstream
Tssr51621 transcription start site region 51621 855 bp upstream
Tssr51622 transcription start site region 51622 819 bp upstream
Tssr51623 transcription start site region 51623 803 bp upstream
Tssr51624 transcription start site region 51624 786 bp upstream
Tssr51625 transcription start site region 51625 776 bp upstream
Tssr51626 transcription start site region 51626 764 bp upstream
Tssr51627 transcription start site region 51627 738 bp upstream
Tssr51628 transcription start site region 51628 628 bp upstream
Tssr51629 transcription start site region 51629 534 bp upstream
Tssr51630 transcription start site region 51630 486 bp upstream
Tssr51631 transcription start site region 51631 447 bp upstream
Tssr51632 transcription start site region 51632 188 bp upstream
Tssr51633 transcription start site region 51633 595 bp downstream
Tssr51634 transcription start site region 51634 717 bp downstream
Tssr51635 transcription start site region 51635 1681 bp downstream
Tssr51636 transcription start site region 51636 1707 bp downstream
Tssr51637 transcription start site region 51637 1820 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory