rs224110696 SNP Detail

Summary

• ID
  rs224110696
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116510315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACA GGGTCCTGAG AGAGAGGACC
  R
  GGAGATCAGA AGATAAGCAG AAAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277680	CHEV_4_116325723	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224110696					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116510315 () rs orientation: forward

Symbol	Name	Function Class
Akr1a1	aldo-keto reductase family 1, member A1	1444 bp upstream
Cpgi14637	CpG island 14637	1411 bp distal
Rr597944	regulatory region 597944	1449 bp distal
Rr597945	regulatory region 597945	1431 bp distal
Rr597946	regulatory region 597946	948 bp distal
Rr597947	regulatory region 597947	1912 bp proximal
Tssr38539	transcription start site region 38539	1583 bp downstream
Tssr42909	transcription start site region 42909	1709 bp upstream
Tssr42910	transcription start site region 42910	1692 bp upstream
Tssr42911	transcription start site region 42911	1672 bp upstream
Tssr42912	transcription start site region 42912	1569 bp upstream
Tssr42913	transcription start site region 42913	1547 bp upstream
Tssr42914	transcription start site region 42914	1482 bp upstream
Tssr42915	transcription start site region 42915	1453 bp upstream
Tssr42916	transcription start site region 42916	1436 bp upstream