rs224110865 SNP Detail

Summary

• ID
  rs224110865
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59700740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aattcacag cagccacatg gtggctcaca
  accacctgta atggaacctg atgccctctt ctggtgtaac tgtgtactca cataaataaa
  tctttaaaag aagaaaaaGT TGggggctgg tgagatggct cagtgggtaa gagcacccga
  Y
  tgctcttccg aaggtctgaa gttcaaatcc caccaaccac atggtgactc acaaccaccc
  gtaatgagat ctgatgccct cttctggagt gtctgaagac agctacagtg tacttacata
  taataaataa ataaatctaa aaagaaaaaa                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319738946	CHEV_1_59718425	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224110865					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59700740 () rs orientation: forward

Symbol	Name	Function Class
Gm71026	predicted gene, 71026	43 bp downstream
Rr16806	regulatory region 16806	within coordinates
Rr22465	regulatory region 22465	1540 bp distal
Rr27302	regulatory region 27302	333 bp distal
Rr371358	regulatory region 371358	1922 bp upstream
Sumo1	small ubiquitin-like modifier 1	within coordinates
Tssr11830	transcription start site region 11830	858 bp downstream