rs224111795 SNP Detail

Summary

• ID
  rs224111795
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122639877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCCGTG CTCTCGTTGA
  CCCCGAAGTG GCCCAGCACC TCCTCCACGG TCTTTGTGTG AGCGTTCTCC ATGGCTGCGG
  GGGCCCCGGC CGGCCTCGCC TCGCGTCCCC GCGGCCTCCT CGCCTACCGC CTCGCACTCC
  GGCCGCGGGC TCGTGCCACC GCGGGCGCCC GGGCGCGGAC AGCTGTCCCC TCCTTTTTCT
  Y
  CTCCTCCTCC TCCTCCGCGG CGGCGGCGGC CGCTTCCGCC TGACCGGGGC GCTGAATCAC
  CCGAGCCCCC TCCCCCAGAA ACCGCCGCAC GCGGCCCGGC CTCGCCGAGC CCGCCCGAGG
  GACTGCGAGC CTCCCGCCCC GCCGCGAGTG TGGGTCGCTT CAGCAGCTGC CAGCCGGCCG
  CGGGCAGCGC AGGCCCCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366519162	MGP_WTSI_5_122951823	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224111795					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366519162	MGP_WTSI_5_122951823	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122639877 () rs orientation: forward

Symbol	Name	Function Class
Atp2a2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	within coordinates
Cpgi16553	CpG island 16553	within coordinates
Gm43361	predicted gene 43361	966 bp downstream
Gm57291	predicted gene, 57291	631 bp upstream
Rr378565	regulatory region 378565	1938 bp upstream
Rr399329	regulatory region 399329	1639 bp upstream
Rr619900	regulatory region 619900	1238 bp distal
Rr619901	regulatory region 619901	312 bp distal
Rr619902	regulatory region 619902	71 bp proximal
Rr619903	regulatory region 619903	364 bp proximal
Rr619904	regulatory region 619904	670 bp proximal
Tssr1626	transcription start site region 1626	883 bp downstream
Tssr48697	transcription start site region 48697	1079 bp downstream
Tssr48698	transcription start site region 48698	201 bp downstream
Tssr48699	transcription start site region 48699	79 bp downstream
Tssr48700	transcription start site region 48700	4 bp downstream
Tssr48701	transcription start site region 48701	652 bp upstream
Tssr53124	transcription start site region 53124	1473 bp upstream
Tssr53125	transcription start site region 53125	1439 bp upstream
Tssr53126	transcription start site region 53126	981 bp upstream
Tssr53127	transcription start site region 53127	591 bp upstream
Tssr53128	transcription start site region 53128	549 bp upstream
Tssr53129	transcription start site region 53129	533 bp upstream
Tssr53130	transcription start site region 53130	26 bp upstream
Tssr53131	transcription start site region 53131	322 bp downstream
Tssr53132	transcription start site region 53132	348 bp downstream
Tssr53133	transcription start site region 53133	378 bp downstream
Tssr53134	transcription start site region 53134	453 bp downstream
Tssr53135	transcription start site region 53135	469 bp downstream
Tssr53136	transcription start site region 53136	813 bp downstream
Tssr53137	transcription start site region 53137	917 bp downstream