rs224113832 SNP Detail

Summary

• ID
  rs224113832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129228624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGTCAAAG GCCGCTAAAA
  TGTTTTTAAA AGACAAATCA AGTTAGCGAA CGTAAACGGA AAGGGCACAA ACCTCTCCAA
  GCCACCGGCG TAGCGCCCGG ATTTTGACAA CGAAATGGAG ATTCATCTTA ATCTCCCAGG
  TCGCGGGCAC CAACGCCACT CTCGGCCGCG GCGGGCCGGA AGTCCTGGGG CCACCCCAGC
  Y
  GGACACTCCG TTACTCCTTC GGGGGCCGAT GGTGTCCAAC CCCGAACGAA GCACGGTGGC
  GCGCGCCAAG TCCGCCAAAC CCGGGGAGGA GACCTGCGCA TCGAGCCTGG GGATGGAGAG
  CGGCGCCCCG AGTCTCGGCA GGCAGAGGGA CCGGCAGGGA GCCTCGTAGT CGCCTAGGCC
  GGAGACCTGG CGTCGCCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312038	CHEV_4_129012075	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224113832					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129228624 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14889	CpG island 14889	within coordinates
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	within coordinates
Rr367701	regulatory region 367701	528 bp upstream
Rr367702	regulatory region 367702	976 bp upstream
Rr600200	regulatory region 600200	490 bp proximal
Rr600201	regulatory region 600201	529 bp proximal
Rr600202	regulatory region 600202	1910 bp proximal
Tssr39141	transcription start site region 39141	762 bp upstream
Tssr39142	transcription start site region 39142	1131 bp upstream
Tssr39143	transcription start site region 39143	1185 bp upstream
Tssr43492	transcription start site region 43492	412 bp downstream
Tssr43493	transcription start site region 43493	466 bp downstream
Tssr43494	transcription start site region 43494	493 bp downstream
Zbtb8os	zinc finger and BTB domain containing 8 opposite strand	701 bp upstream