rs224125209 SNP Detail

Summary

• ID
  rs224125209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56265165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTGGCAC AAGACCTCTG
  GTTTCTGCTA CCCTATCAAT ACTGGACCCT CACTGGGACT CCTCTCAGAT ATCCTATGTT
  GCCCTGTAGT TTTTCAATTG TAGGACCTGC TCCTTCATAT TCCAGCAGTT CATCAGTGGG
  GTAGATGTTG GAATGAGCCA ATTCAAAGCC CTGGATCTGG GCCTGAAAGG TTTCCTAGCT
  R
  TTTAGCCTGC TGAGTCTCTC GTGCCTTTGG AGTTAGCTCA CCAGCAAATC CTCCAGCCGG
  GGCCGGTTCT ATCCCACTGG CCAGGTGAGG TGCAGGGCCT GCCCTCCCGA GTGCTGCAGC
  AGGTGAGGGG CAGGGAGAGC TTTCTTGTTC TGATGACCCC AAGGCCAGGG CTTCCATCTG
  CCCTGGTGGT GAAGGATAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325856828	CHEV_19_56351223	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224125209					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56265165 () rs orientation: forward

Symbol	Name	Function Class
Gm22271	predicted gene, 22271	785 bp downstream
Gm32257	predicted gene, 32257	within coordinates
Rr549993	regulatory region 549993	619 bp proximal
Rr549994	regulatory region 549994	849 bp proximal
Rr549995	regulatory region 549995	1269 bp proximal
Rr549996	regulatory region 549996	1295 bp proximal
Rr549997	regulatory region 549997	1359 bp proximal