rs224125389 SNP Detail

Summary

• ID
  rs224125389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:21422924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGCTTGG AAGTTTGAGC
  CTCGCTCTCT CAGCTAAGCA CCTCTCCAAC AAGACGGATG ATCTCGAAAT CCAATGCAAG
  ATTCCAAATA CAGTCGAAAA ATGCAAATGA AACTACATCA GTCGCCACCT TCCAACCAGG
  TACTGCATTC AGTACCTCCT ACATATAACT TCAAGTTAGC CTCTGAGAGC CAACAAGTGG
  Y
  GGAGAGCTTT GGGACTGTCC TTTCTTCCCA GGGTCTTGCT TTCAGCAGAA ACACCTAACA
  CCTTAGATTC ACTTGTTAGC AAGTAAAGGA CCTCGACCAA ATCTCACACT CCACAAACGA
  ACCATCCATG TGCCAACACC TCTTTTCTAA ATATTCCAGA AATAAACCTG GGAGAACTTG
  CCCGTCCCAG GCCCTCGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385303690	MGP_WTSI_12_21378784	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224125389					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385303690	MGP_WTSI_12_21378784	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21422924 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adam17	a disintegrin and metallopeptidase domain 17			Intron
				Noncoding-Transcript-Variant
Cpgi4477	CpG island 4477			264 bp proximal
Gm49586	predicted gene, 49586			750 bp upstream
Rr463711	regulatory region 463711			1942 bp distal
Rr463712	regulatory region 463712			495 bp proximal
Rr463713	regulatory region 463713			606 bp proximal
Rr463714	regulatory region 463714			620 bp proximal
Rr463715	regulatory region 463715			761 bp proximal
Rr463716	regulatory region 463716			800 bp proximal
Rr463717	regulatory region 463717			1288 bp proximal
Tssr112932	transcription start site region 112932			767 bp upstream
Tssr112933	transcription start site region 112933			1329 bp upstream
Tssr115856	transcription start site region 115856			558 bp downstream
Tssr115857	transcription start site region 115857			578 bp downstream
Tssr115858	transcription start site region 115858			603 bp downstream
Tssr115859	transcription start site region 115859			627 bp downstream
Tssr115860	transcription start site region 115860			683 bp downstream