rs224131104 SNP Detail

Summary

• ID
  rs224131104
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147019762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATCAACCT TTTCATCACA CTCCAAGGGA
  CAAGCACCAA GCCAAAGAAT TGTAATTCTT TCTTTGGCAT TGTGGTCCTA CTGTAAATGG
  ACTTTACCCA GACATCCCTC AAATCCACAG ATGACCAGAT TGTGCTCCCA GGCCTGAGTC
  W
  GTCGCCCGAC CTGAAATTGT TTTCTTATCC AATCGCTCCA CCTTGCGGAC ACTATGGGCA
  CCGCAGCTTC GATCCTGGCA TCCATCCGTC GGTTTTGAAA TGCTGGTTTA AGAAAGTAAA
  AAGATCAGTG TCTGGAGCGC CAAGGTGGAC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320548164	CHEV_2_147003578	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224131104					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147019762 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	451 bp proximal
Cpgi12377	CpG island 12377	800 bp proximal
Nkx2-2	NK2 homeobox 2	within coordinates