rs224137666 SNP Detail

Summary

• ID
  rs224137666
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152102621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCGCGCGC CCGGGCGCCG
  GGAGCCTTCG TGCGCGCGCC TCGCCGTCGC CTGCGGCGGT GCAGAGCGGC TGTCGCGCGC
  CGCGCTCCTC CCGCCCCCGG GCGCCCGCCA CCTGCGGAGA CCTCCCCGCC GGCCGCTGCC
  CGGCGCTCGC TCGCCGGCCC GGAGGCCGCT GCCAGCCCGC CCCGCCCGCC GCCGCCCCCT
  M
  TGCCCAGTTA CCCTCTCTGC AGACAGCTCC ACTTTCCTGT CGCCTGTGGC TGCAGAATCT
  TCCCCCAGTC TCCCAACAGA ACGCATAGCA TCTCTCGTGT CCGGGCGTCA TTTAGCCACC
  CACTTGTCTA TTGGGAAGTT CTCCTCGTCA CCCTGGCTGC TGACAGTAAC TTTTGGCAGT
  GTTTGGGAGG CCCCCTCACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss360265605	MGP_WTSI_3_152059948	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs224137666					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360265605	MGP_WTSI_3_152059948	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152102621 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13950	CpG island 13950			within coordinates
Rr587542	regulatory region 587542			1501 bp distal
Rr587543	regulatory region 587543			842 bp distal
Rr587544	regulatory region 587544			1062 bp distal
Rr587545	regulatory region 587545			1002 bp distal
Rr587546	regulatory region 587546			913 bp distal
Rr587547	regulatory region 587547			280 bp distal
Rr587548	regulatory region 587548			723 bp distal
Rr587549	regulatory region 587549			688 bp distal
Rr587550	regulatory region 587550			266 bp distal
Rr587551	regulatory region 587551			within coordinates
Rr587552	regulatory region 587552			713 bp proximal
Tssr32410	transcription start site region 32410			1495 bp downstream
Tssr32411	transcription start site region 32411			925 bp downstream
Tssr32412	transcription start site region 32412			902 bp downstream
Tssr32413	transcription start site region 32413			590 bp downstream
Tssr32414	transcription start site region 32414			282 bp downstream
Zzz3	zinc finger, ZZ domain containing 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant