rs224140939 SNP Detail

Summary

• ID
  rs224140939
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12114060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTTCCCC CTTCCCATAG
  AGCCCGGGGC CTATATTTAT CGCGAAACGC ATGTTCCCAA GGCAGCTGTG AGCGGAGCAT
  CGGATTGCCT CTTGAAAACT TTTTGCCCCC TTTACGAGGG GATTTCCTAC TTTAATTTTT
  ATTTTCGAAG CCTCAAGCCA GGACAGCTGG AGAGTACAAA CTCCAAGAGC GGGCCATTTT
  G
  TTTTTGAGAG CCTTTTGTCT TCAGGCTTTT GCAGTCCAGT ACAAGTCGTC CCGCACTCGG
  GTCCCGGCTA GGAGCCTCCC TGCTCCTGCC TTCTCCGGGC GTATCTAGTG CCACCTGTGC
  GCCGCGGAGA GTGCCATAGC TCCTCGGAGC CCCTTTTGTC CTGCAGTAGG CCATGTTTTC
  TGAAGTCCTC CAGGCGGGGC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss360613290	MGP_WTSI_4_12041207	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs224140939					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360613290	MGP_WTSI_4_12041207	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12114060 () rs orientation: forward

Symbol	Name	Function Class
Gm11839	predicted gene 11839	224 bp upstream
Rr589052	regulatory region 589052	613 bp distal
Rr589053	regulatory region 589053	746 bp distal
Tssr36503	transcription start site region 36503	695 bp downstream
Tssr36504	transcription start site region 36504	596 bp downstream