rs224159774 SNP Detail

Summary

• ID
  rs224159774
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59680008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTTTTT GTTTTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTTCTTTGT GGGTTGGTTT TTTTTTTTTT TTTGGTTTTT
  CGAGACAGGG TTTCTCAGTG TAGCCCTGGC TGTCCTGGAA CTCACTTTGT AGACCAGGCT
  GGCCTCGAAC TCAGAAATCT ACCTGCCTCT GCCTCCCGAG TGCTAGGATT AAAGCTGTGC
  K
  CAAGGTTAAT TGGTGATTCC GCTGAGTTGA CAATAAAGGA GGGGGATATT TTGTGACAGA
  AAGAACCAAA CACAAACAGT GCACACACAA AAAATTGACT TTCTTACTTT ACTTTTTTTT
  TTTTTTTTTT TTTTTTGACT TTTCAGGGTT TTTAATAGTC ACATGCAGAG GTCTGGTTCA
  TTTCAGCTCC TTCACTGCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324646629	CHEV_14_60061396	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224159774					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59680008 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	within coordinates
Cpgi6560	CpG island 6560	1228 bp distal
Gm45935	predicted gene, 45935	1679 bp upstream
Rr404137	regulatory region 404137	1501 bp downstream
Rr493049	regulatory region 493049	1695 bp distal
Rr493050	regulatory region 493050	1568 bp distal
Rr493051	regulatory region 493051	793 bp distal
Setdb2	SET domain, bifurcated 2	1679 bp upstream
Tssr125903	transcription start site region 125903	1977 bp downstream
Tssr125904	transcription start site region 125904	1563 bp downstream
Tssr129008	transcription start site region 129008	1672 bp upstream
Tssr129009	transcription start site region 129009	1462 bp upstream
Tssr129010	transcription start site region 129010	1451 bp upstream
Tssr129011	transcription start site region 129011	1252 bp upstream
Tssr129012	transcription start site region 129012	1249 bp upstream
Tssr129013	transcription start site region 129013	1242 bp upstream