rs224160314 SNP Detail

Summary

• ID
  rs224160314
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40691619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tccatttcc cccaggaaca gccacagtgt
  gctttcttca atgtaacatg acccatgcaa ctcttctgtt gcctctatgg tgaaatgctt
  gcctggccta ttaggatcca tgggagtgat cccttcctgt ctctgtgact tcatctcccc
  R
  tgctttccct tgttcattgt gctccagaca cactTATTCA CCACACCCTC TGTACCTCCT
  GGAGGGCTGT CTCCAGTTCA CCACAAGATG GTCCTGTCTT TTGTATTTCA ACTCAAACAC
  CACTTTTCCA AACTGAGACT GTAGTCCCCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322919551	CHEV_9_40588406	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224160314					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40691619 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21601	CpG island 21601	1928 bp proximal
Gm16096	predicted gene 16096	204 bp downstream
Tssr84467	transcription start site region 84467	11 bp upstream
Tssr84468	transcription start site region 84468	753 bp upstream
Tssr84469	transcription start site region 84469	805 bp upstream
Tssr84470	transcription start site region 84470	1954 bp upstream