rs224169265 SNP Detail

Summary

• ID
  rs224169265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94537392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGCGCGTG CCCTGCCCTC
  CCTGCCCGCC TCTTCTCGCG CTCCCCGCTG GCCGCGGCTC CCTCGCGCTC TCCCCGTCTC
  CTGTCCGCTC CGCCGAGCGA TGCGAGTTCT GGGCCCCGGC GACGCCGCCT CCCGCTAGAG
  AGAGCTGCAC CCCCCACCCC CGGCCCGGCC CTCTGCCCAG CCCTGCCCCG CGCGCGGGGG
  Y
  CGGAGAAGGC GCCGCGGACG CATCGACGGC CGAGGAGCGG CGATGCACAT GCACTAGCGG
  CACCCCCTAA CTCACTCCCT CCACACCCCG CGCCACCGCC GCCTCCACCT TCTCCGCCTC
  CGCCTCCTCC TCCTCCGCCT CCGGCAGCCG CGGCAGAAGG ACCCACCCTG CCCCCCACCC
  CACCCTCCGC CGGCTCCGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss375627900	MGP_WTSI_8_96334664	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs224169265					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375627900	MGP_WTSI_8_96334664	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94537392 () rs orientation: forward

Symbol	Name	Function Class
4930488L21Rik	RIKEN cDNA 4930488L21 gene	930 bp downstream
Cpgi20831	CpG island 20831	within coordinates
Cpgi20832	CpG island 20832	1936 bp proximal
Gnao1	guanine nucleotide binding protein, alpha O	within coordinates
Rr667832	regulatory region 667832	485 bp distal
Rr667833	regulatory region 667833	within coordinates
Rr667834	regulatory region 667834	150 bp proximal
Rr667835	regulatory region 667835	560 bp proximal
Tssr78791	transcription start site region 78791	278 bp downstream
Tssr78792	transcription start site region 78792	201 bp downstream
Tssr78793	transcription start site region 78793	113 bp downstream
Tssr78794	transcription start site region 78794	7 bp upstream
Tssr78795	transcription start site region 78795	26 bp upstream
Tssr78796	transcription start site region 78796	43 bp upstream
Tssr78797	transcription start site region 78797	55 bp upstream
Tssr78798	transcription start site region 78798	68 bp upstream
Tssr78799	transcription start site region 78799	124 bp upstream
Tssr78800	transcription start site region 78800	166 bp upstream
Tssr78801	transcription start site region 78801	226 bp upstream
Tssr78802	transcription start site region 78802	319 bp upstream
Tssr78803	transcription start site region 78803	519 bp upstream
Tssr78804	transcription start site region 78804	558 bp upstream
Tssr82468	transcription start site region 82468	503 bp upstream
Tssr82469	transcription start site region 82469	1967 bp downstream