rs224171249 SNP Detail

Summary

• ID
  rs224171249
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100824405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAAGAGC TAAACAAAGT
  TATTGGTGCT TCTATTTTCA TACAAGCTAA TCCCACTAGA TGGCACTAAA GAGTCGCATG
  TTAGGAATCG GGCCGTGCTA ACCTCAGAAA CAAAAATAAG CTATCTGAAC TAGCAATGCA
  TTTCCCCGAT GATTTGTACT GATATTATGA TTTTCTAGAT ATGAACCACA AGTCTCAACC
  W
  CTTATTCGTT ATAGGATACG GTGTGTTTCA GACCCTGTGG CCCATGTTAG CAATGCAGCA
  GTGAGACAGG AGCCCACGTG GTTAGAGGTT TGATGAACAG CATTGTCCAG AGGATCTGAG
  TTCAGTTCCC AGCACCTACT GGGTGGCTTA CAAGCACTTG TAACTCCAGC TCCATAGGAT
  CTGATGCCCC TGCCCTTGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320850250	CHEV_3_100721012	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224171249					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100824405 () rs orientation: forward

Symbol	Name	Function Class
Gm40108	predicted gene, 40108	1869 bp downstream
Rr581925	regulatory region 581925	within coordinates
Rr581926	regulatory region 581926	131 bp distal