rs224173521 SNP Detail

Summary

• ID
  rs224173521
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30064880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCCATTG TCTGAAAAAT
  GGCCATATTG GAGAAAGGCC TTTGAAGGCT GAAGTCAATG GGACCTCCCC TGATCCCATC
  TAGGACACAG ACAAGACACT GGGAGAAGAG GCAGCCAGCC AGGGAGCCCA ACCCTGCTGG
  CACCCTGACC TCAGACCTTC AGGCTCCATG CTGAGAGGTC CCCACAGTGG CCTTTCTAAG
  M
  TGATACCATT CCACAATCCT AGCCACTGTG TCTCTTTCCA TTTTCCAAAC AGCCAGTGTG
  CTCACCTACC TCAGGGACTT TGCATATGCT GATTCTGTGT CCTCTCTCTC TCTTTGTAAA
  CCATCTGAAA TAGGTTCAGC TTCCTACCAA GTTCAATGAA CACAGCAGCT ATTTTCCCAT
  TATGCTACCC CAGGTTGTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325355126	CHEV_17_29982851	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224173521					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30064880 () rs orientation: forward

Symbol	Name	Function Class
Gm56908	predicted gene, 56908	637 bp upstream
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	within coordinates
Rr330462	regulatory region 330462	521 bp proximal
Rr341132	regulatory region 341132	121 bp proximal
Rr392501	regulatory region 392501	902 bp upstream
Tssr143596	transcription start site region 143596	624 bp upstream
Tssr143597	transcription start site region 143597	641 bp upstream