rs224179250 SNP Detail

Summary

• ID
  rs224179250
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35026565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCCACAT AGAACAGAAG
  ATGACCTGGA TGATCTACAG TCAAAATGCT GGCATAACAT TTCCAGAGTG CTGGGATTAT
  AAATAGGTAC CACCACAATA TGTTTAGGCA ATGTTAAGAG ATCAAGTTTA AAGAGTTTAT
  GACAGGTAAA CACTTTACCA ACTGCATTCC TTGTGTCGTT GTCCGTCCTC CCCCCCCCCC
  G
  CCGCCCCCCC CCCCAGTACT GGGATTGTAG GCAGCTCCGT CTGTCACTGA ACCACACCCC
  CAGTCCCTAA TTTACTTTTA TGACTTCTGC CTGCATACCT CTCTTTATCT CCATCATCAC
  CTTGAAATCT TTGGGGACTG GCCCAACTCC TGGCTTGCTG TAGTGGGGCT GGGGGATCGG
  ATGTGTTGAG GAGGGTGAAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	BALB/cByJ	BALB/cJ	C57BL/6J	FVB/NJ	NZO/HlLtJ	PWK/PhJ	RIIIS/J	SWR/J
ss377194191	MGP_WTSI_9_34922854	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	BALB/cByJ	BALB/cJ	C57BL/6J	FVB/NJ	NZO/HlLtJ	PWK/PhJ	RIIIS/J	SWR/J
rs224179250					SNP	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377194191	MGP_WTSI_9_34922854	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35026565 () rs orientation: forward

Symbol	Name	Function Class
4930581F22Rik	RIKEN cDNA 4930581F22 gene	1459 bp upstream
Cpgi21550	CpG island 21550	984 bp proximal
Gm57537	predicted gene, 57537	1931 bp downstream
Rr676432	regulatory region 676432	969 bp proximal
Rr676433	regulatory region 676433	1480 bp proximal
Rr676434	regulatory region 676434	1594 bp proximal
Rr676435	regulatory region 676435	1776 bp proximal
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates
Tssr84325	transcription start site region 84325	1471 bp upstream
Tssr84326	transcription start site region 84326	1661 bp upstream
Tssr88717	transcription start site region 88717	1491 bp downstream
Tssr88718	transcription start site region 88718	1535 bp downstream
Tssr88719	transcription start site region 88719	1706 bp downstream