rs224180624 SNP Detail

Summary

• ID
  rs224180624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127501343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTATCAGG AAAAACGCTT
  ACCTCGTCTT TTACTTTGAT CTTTCTGGTC TGGGCAGCAC CATCTTGAGC CCTGAGACTT
  TTCATAACTT CCCTGAAATG GCTGGACCCA CTTCCCTCCC AACTAAGTCC TTACCTCTTC
  CCCCTAAATA CTCAGCAGCC TCAACATTAC TTAATGTAAC ATCCCATATT AAAGTTAACT
  Y
  AGAATACTAA GAGCTATTGC TGGCAGCTGT ACTCCTTGGC CAGGTAGCTG AGAGGGAGGG
  GTGTGGCCTC TTCCTTGGCA TTTAGGGAAC CTGGTAGACC CTTGCTCCTG TTCTTCGCTT
  CCAAGGATTA AAGCACCCTT CCTAGACTCT GTCCCAACTT TCCAAAGGCT GCCCAGTTCC
  CTTCAGTTAC CCCCTCTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382189880	MGP_WTSI_10_127102530	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224180624					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382189880	MGP_WTSI_10_127102530	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127501343 () rs orientation: forward

Symbol	Name	Function Class
1700012D01Rik	RIKEN cDNA 1700012D01 gene	1649 bp upstream
Cpgi2371	CpG island 2371	593 bp proximal
Gm16229	predicted gene 16229	within coordinates
Nab2	Ngfi-A binding protein 2	within coordinates
Rr224427	regulatory region 224427	within coordinates
Rr369095	regulatory region 369095	1479 bp upstream
Tssr96239	transcription start site region 96239	1643 bp upstream
Tssr96240	transcription start site region 96240	1681 bp upstream
Tssr99812	transcription start site region 99812	1993 bp upstream
Tssr99813	transcription start site region 99813	1124 bp downstream
Tssr99814	transcription start site region 99814	1199 bp downstream
Tssr99815	transcription start site region 99815	1310 bp downstream
Tssr99816	transcription start site region 99816	1420 bp downstream