rs224182503 SNP Detail

Summary

• ID
  rs224182503
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58957189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTCAGTAT ACGATAATTA TATTGGAACA
  TTTTTGTTTG GTAAAATATA CTGTGTGTGT GTGTGTTGAG AGAAGTTCCA GTGATATTAA
  CCAGAAAGGA GGTTAAAATT ATTCATTTTC AAGAATTGGT TGGAGGAAGT GAGGGTCTCT
  M
  CCTTAACATC TTTTCCCGAG GCTTGGAGTT GACTGGTCCT GTTCCCCCTT TTCCATCTCA
  TCTATTGGAT TTTGCTTCAG AGATTGCAGC CAGAGATGCT TTGAGGATGC CCTGTAAGAG
  GAGAAGTTCT GAGTGTCGAA AAGCACTCGC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324354888	CHEV_13_58910736	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224182503					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58957189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5731	CpG island 5731	418 bp distal
Ntrk2	neurotrophic tyrosine kinase, receptor, type 2	within coordinates
Rr281494	regulatory region 281494	within coordinates
Tssr120084	transcription start site region 120084	1675 bp downstream
Tssr120085	transcription start site region 120085	1537 bp downstream
Tssr120086	transcription start site region 120086	1492 bp downstream
Tssr120087	transcription start site region 120087	1473 bp downstream
Tssr120088	transcription start site region 120088	1089 bp downstream
Tssr120089	transcription start site region 120089	623 bp downstream