rs224194935 SNP Detail

Summary

• ID
  rs224194935
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:77042176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTCAATC TTACCAGACT
  TCCTCTTGAG GTCCACCACT GCTCAATGCA AGTATTAAGA AACCCATTGT AAATGATCAG
  TATCAAAGCC AAATCTGACA TATACAGCAG AGGCCTGCTT GGTCTGGCCT CATTCAGAGG
  AGATGTACCT AACCCTCAAG AGACTTGAGA CCCCAGGGAG TGGGAAGGGG ACATCCTATT
  R
  GAGATAGGGA GGAGGAGGAA TGGGATAAAG AACTGTTGGA AGGATAACTG GGAGGGGGAT
  AATGACTGGA GTGTAAAAAA TAAGATTAAA GATAATAATA AATATGAAAA AAGTGAAGCC
  CAATGTCCCT GAGGCGGGTT CCACTACAAT CATGTCATGC TTGCCTCAGA ATTCTGTTTC
  CAATCCTTGA TGTGTACCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ
ss350178630	MGP_WTSI_1_77062114	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ
rs224194935					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350178630	MGP_WTSI_1_77062114	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:77042176 () rs orientation: forward

Symbol	Name	Function Class
Gm70876	predicted gene, 70876	within coordinates
Tfdp1-ps	transcription factor Dp 1, pseudogene	331 bp upstream
Tssr7562	transcription start site region 7562	327 bp upstream