rs224209648 SNP Detail

Summary

• ID
  rs224209648
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156077139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGGCTCCG GAAGCGGAGG
  GCGTCTCGCC CTCGGAAGCG CAGCGCGCCA GGTACAACAG AGTGGTGCCG CAGAACGCCA
  GGCCGCCTAG GCCCAGCGCC ACCCGGTGCC GCCAAGCGCG CCGGAATACC TTCATGCTGC
  GGGCGAGAGG CCGCCGAGGA GCGCAGGCGC GGACGCTGGA AGGCGCCTGC GCGACTCGGA
  S
  GCTGGAAGGC GCCTGCGCGA CTCGGAGGCT GGAAGGCGCC TGCGCGACTC GGAGGCTGGA
  AGGCGCCTGC GCGACTCGGA GACTGGAAGG CGCCTGCGCG ACTCGACTCG GAGACTGGAA
  GGCGCCTGCG CGACTCGACT CGGAGACTGG AAGGCGCCTG CGCGACTCGG AGACTGGAAG
  GCTCGGAGGC TGGAAGGCGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SJL/J	WSB/EiJ	ZALENDE/EiJ
ss363809035	MGP_WTSI_4_155366791	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SJL/J	WSB/EiJ	ZALENDE/EiJ
rs224209648					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363809035	MGP_WTSI_4_155366791	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156077139 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	33 bp upstream
Cpgi15496	CpG island 15496	within coordinates
Rr377473	regulatory region 377473	within coordinates
Rr606629	regulatory region 606629	1320 bp distal
Rr606630	regulatory region 606630	87 bp distal
Rr606631	regulatory region 606631	within coordinates
Rr606632	regulatory region 606632	within coordinates
Rr606633	regulatory region 606633	210 bp proximal
Rr606634	regulatory region 606634	571 bp proximal
Rr606635	regulatory region 606635	706 bp proximal
Sdf4	stromal cell derived factor 4	190 bp upstream
Tssr1404	transcription start site region 1404	257 bp upstream
Tssr40748	transcription start site region 40748	269 bp downstream
Tssr40749	transcription start site region 40749	461 bp upstream
Tssr40750	transcription start site region 40750	548 bp upstream
Tssr40751	transcription start site region 40751	623 bp upstream
Tssr40752	transcription start site region 40752	766 bp upstream
Tssr44987	transcription start site region 44987	340 bp upstream
Tssr44988	transcription start site region 44988	8 bp upstream