rs224212669 SNP Detail

Summary

• ID
  rs224212669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:65336923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACTTGGG GAGGAAAGGG
  TTTATTAGGC GTACACATCC CAGTCACAGT TTATTATTGA AAGAAGCTGA AGCATAAACT
  TTAAAGCAGG GCAGGGCCCT TGGAGGCAGA AATTGAAACA GAGGCCTTGA AGTTAGGCTG
  TTCACTGGCT CGTTTCCCAT GGCTGGCTCA GTTTTCTTTT TTTCTTTTTT TTTTTTTTTT
  Y
  TTTTTTACAC TAGAGACCAC CTGCCCAAGG GTGGCTCTGT GCATAATAGG CTGGGTCTGC
  CCCAGACTTG CCCACAGGCC AATCTGATAG ACGAGTTTCT CCCTTCCCCC CTTCCCTCCT
  CCCTCTCTCC ACTTGGGGGA GAACATTTTG AGGTCTCCCT CTACATGGCT ATTTTGGAAC
  TCACTATGTA GACCCGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J
ss391347595	MGP_WTSI_14_65718311	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J
rs224212669					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391347595	MGP_WTSI_14_65718311	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:65336923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6626	CpG island 6626	1034 bp distal
Extl3	exostosin-like glycosyltransferase 3	within coordinates
Gm52119	predicted gene, 52119	within coordinates
Rr369853	regulatory region 369853	1792 bp downstream
Rr404153	regulatory region 404153	1167 bp downstream
Tssr126200	transcription start site region 126200	1223 bp upstream
Tssr129239	transcription start site region 129239	1374 bp upstream