rs224213616 SNP Detail

Summary

• ID
  rs224213616
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:82423688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACCGCGC TGGTAAAGTT
  CAAGGTTACC GCCGCCAACA CTGCAGCAGG ATCCGGGAGT GGCGATCGCA GGCGAAACTT
  TGCTGCGAGC CGACCACGTG TGTGCGCGAG GGGGAGCGCA AGCGAGTGCG CGCGGGTGGC
  GGGGCGCGCG CAGGAGAGGG CCGGGTGGGG GTGGGGGTGG GGGGGAGCAG GGAGAGGCCG
  G
  GGTGAGGGAG GGGGCGCAGG CGCGGAGCTC CCGGGCGGAA AAGCCTTTGC TGCGCTCCTG
  CCCCGCCGCA CCGCCGCCCG CCCGCTTCGC CCCGGGTCTG ACCCGCCGCG CGTGGACTCC
  GCTGCCGGTG CCGCTGGCCA CAGCCCACGG AAAGGATCGG AAGGACCTCC TGAAAAAAAT
  CCCAAACGAT CGATCCCGCT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362190670	MGP_WTSI_4_82151355	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224213616					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362190670	MGP_WTSI_4_82151355	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82423688 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57123	predicted gene, 57123			332 bp downstream
Nfib	nuclear factor I/B			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr594357	regulatory region 594357			154 bp distal
Rr594358	regulatory region 594358			within coordinates
Rr594359	regulatory region 594359			1951 bp proximal
Tssr37680	transcription start site region 37680			472 bp upstream
Tssr42247	transcription start site region 42247			553 bp upstream
Tssr42248	transcription start site region 42248			222 bp upstream
Tssr42249	transcription start site region 42249			196 bp upstream
Tssr42250	transcription start site region 42250			93 bp upstream
Tssr42251	transcription start site region 42251			65 bp upstream
Tssr42252	transcription start site region 42252			145 bp downstream
Tssr42253	transcription start site region 42253			228 bp downstream
Tssr42254	transcription start site region 42254			267 bp downstream
Tssr42255	transcription start site region 42255			298 bp downstream
Tssr42256	transcription start site region 42256			352 bp downstream
Tssr42257	transcription start site region 42257			382 bp downstream
Tssr42258	transcription start site region 42258			407 bp downstream
Tssr42259	transcription start site region 42259			981 bp downstream