rs224224557 SNP Detail

Summary

• ID
  rs224224557
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:128511151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCTCTG GGCTCATCCG
  TATTTGGGTA TCTAGCAAGC TAAGGGTGGT CAATGCAGGC AGAGCCGCCA ACCAGTTCTT
  ACCCAGGTGA AGCAGGGGGT TTCCATCCAG CTTCAAGGTC TCTAGTTGCT GGAGCTCCTG
  GAATAGGTAT CCCTCCAGGG AAAGCAGCTG GTTGTACCGA AGCAGCAGCT CTCGCAAGTG
  K
  GGTAAGCAGG AGAAGGCGGC TGGAGGCAGG ATGCGCAACC TGTTGCCTGA CAGATCCAGA
  GTCGTGAGTC CTGACACATC TCCCGTCTCA TTCATGCACA GCACGGCGCT CTGCAGTTGG
  TTTCCGGACA GCTCCAGTCG CTGAAGCCTA GGCATGGCAG TCAGGAAGCC TGGTGGAAGC
  TTGGTTAGGC CAGTGCTTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321305821	CHEV_4_128294602	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224224557					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128511151 () rs orientation: forward

Symbol	Name	Function Class
Rr599982	regulatory region 599982	1251 bp proximal
Rr599983	regulatory region 599983	1633 bp proximal
Tlr12	toll-like receptor 12	Coding-Synonymous
Tssr43437	transcription start site region 43437	958 bp downstream
Tssr43438	transcription start site region 43438	1214 bp downstream
Tssr43439	transcription start site region 43439	1251 bp downstream
Tssr43440	transcription start site region 43440	1270 bp downstream