rs224231342 SNP Detail

Summary

• ID
  rs224231342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135777497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTAAGGT CTGCTCATGT
  CTAGCCCCTG AGCTGTCTAT CAGCCTGACC ATGGCTTCAG TAGGAGGGCT CTGCTGTGTG
  TGACAGTTAG AACACTAATA TGTCTCCAAA TTCTGGCTCC CCAAAGGGAC AACTGGGAGA
  ATCTTGGGTC CTGGAGTCCA TGCTCTGGTC TGCAATAACC TCCTTTTTTT TCATGTGGCC
  Y
  GGTACTGCTT GCCCTGTAGT TTCCAAGAGA CAGATGAGCT AACACGTAAA ACATAAAAAG
  AGTGTGCTGC ACAGATGTTG GGTGGTTTGC TTGTGGCCAG TCAGTTCCTC ACGCCTACTA
  GATATCTCCC TTTCAAGGCT GAGCTCTGAT TGATTTCTTT CTACCTTTTT TTTTTTTTTT
  TTTTTTTTGA GACAGGGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351552089	MGP_WTSI_1_137746336	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224231342					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351552089	MGP_WTSI_1_137746336	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135777497 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	1897 bp distal
Rr12645	regulatory region 12645	904 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr226	transcription start site region 226	1749 bp upstream
Tssr227	transcription start site region 227	314 bp upstream
Tssr9016	transcription start site region 9016	1771 bp downstream
Tssr9017	transcription start site region 9017	1733 bp downstream
Tssr9018	transcription start site region 9018	1715 bp downstream
Tssr9019	transcription start site region 9019	1682 bp downstream
Tssr9020	transcription start site region 9020	911 bp downstream
Tssr9021	transcription start site region 9021	891 bp downstream
Tssr9022	transcription start site region 9022	403 bp downstream
Tssr9023	transcription start site region 9023	329 bp downstream
Tssr9024	transcription start site region 9024	293 bp downstream
Tssr9025	transcription start site region 9025	3 bp downstream
Tssr9026	transcription start site region 9026	188 bp upstream
Tssr9027	transcription start site region 9027	298 bp upstream
Tssr9028	transcription start site region 9028	338 bp upstream
Tssr9029	transcription start site region 9029	918 bp upstream
Tssr9030	transcription start site region 9030	953 bp upstream
Tssr9031	transcription start site region 9031	1012 bp upstream
Tssr9032	transcription start site region 9032	1595 bp upstream
Tssr13890	transcription start site region 13890	1984 bp upstream
Tssr13891	transcription start site region 13891	1739 bp upstream
Tssr13892	transcription start site region 13892	1672 bp upstream
Tssr13893	transcription start site region 13893	1655 bp upstream
Tssr13894	transcription start site region 13894	906 bp upstream
Tssr13895	transcription start site region 13895	862 bp upstream
Tssr13896	transcription start site region 13896	335 bp upstream
Tssr13897	transcription start site region 13897	307 bp upstream
Tssr13898	transcription start site region 13898	978 bp downstream
Tssr13899	transcription start site region 13899	1046 bp downstream
Tssr13900	transcription start site region 13900	1056 bp downstream
Tssr13901	transcription start site region 13901	1617 bp downstream