rs224235009 SNP Detail

Summary

• ID
  rs224235009
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44464090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTATGAC TCGCTCCATC
  TTTATTTGTT CTCCTTTTCC ATTTCTGAGA TGTTTGAGAA TTACGTTCTT GCTATGCTGC
  CTAGGCTGGC CTGACCTCAA GAGGCTGAGA AGCCCCTTGA ACAGGGGGAG CTGAGGGCAT
  GTGCCACCAG GCGCAGTCTG GGACAACCAT CTGTTACATA GTCAAAAGAG ACTGTGCCCC
  W
  GGATCTCTGA GATGGAGCCC CCTTCCACCT TATCATGGCT CCTTCTCCCC ATCCCTCAGC
  CCTCAGTTCA GATGTCATCT ACTTAGAGGG GCTGACTTCT CAACTATGTC TTTCATCACT
  GTCCACTAAG CTTTGGTCTC CCACTTCTGT CTCCTGATGC ACCCATGAGC TTAGGGATCC
  CTTGCTCGGA ACCCTGCAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371164272	MGP_WTSI_7_52070036	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224235009					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371164272	MGP_WTSI_7_52070036	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44464090 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	within coordinates
Cpgi18994	CpG island 18994	1083 bp proximal
Il4i1b	interleukin 4 induced 1B	1704 bp upstream
Nup62	nucleoporin 62	1422 bp upstream
Rr400297	regulatory region 400297	1106 bp upstream
Tssr66425	transcription start site region 66425	1326 bp downstream
Tssr66426	transcription start site region 66426	1263 bp upstream
Tssr66427	transcription start site region 66427	1624 bp upstream
Tssr66428	transcription start site region 66428	1657 bp upstream
Tssr66429	transcription start site region 66429	1698 bp upstream
Tssr66430	transcription start site region 66430	1720 bp upstream
Tssr72229	transcription start site region 72229	1322 bp upstream
Tssr72230	transcription start site region 72230	953 bp downstream
Tssr72231	transcription start site region 72231	998 bp downstream
Tssr72232	transcription start site region 72232	1243 bp downstream
Tssr72233	transcription start site region 72233	1920 bp downstream