About   Help   FAQ
rs224243219 SNP Detail
Summary
  • ID
    rs224243219
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:126046507 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACCGGCAGGG GGTCGACATA
GAGGATGAGG AAGTGGAGGG ACATGGACAG GCAGATGGAA CCCAGCAGCC AGATGTTCAC
CCAGGGTGGC ATCCGCAGTA GGGACTGGTT CTCAGACAGG CTAGAACAAA AGGCCAGGCA
GATGGAGAGA CAGGGATACA GAGAAAGATG TGGTAAGGCA GAGTGGAGGG AGAAGAGAGG
Y
GGGGAGAACA TGAAGGCACA GGGCCCACCC AAGTGGACAA GGCCTACCTG TTGAGAGCAT
TGCACATCTC GATGGTCACC AACACAGACA AGGCCATGGT CATGGGCTCG GGGGCCTCAA
AGACCTCACA GTCCAGGCCA TCGAATTCAG GGTTGTGCTC AGTGCACTGC ATGAAATGAG
TCTATGAAGG AAGAGACAGA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss373068750 MGP_WTSI_7_133590849 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224243219 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss373068750 MGP_WTSI_7_133590849 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:126046507 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Atp2a1 ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 within coordinates
Rabep2 rabaptin, RAB GTPase binding effector protein 2 1428 bp downstream
Tssr2394 transcription start site region 2394 303 bp downstream
Tssr69022 transcription start site region 69022 1277 bp downstream
Tssr69023 transcription start site region 69023 570 bp upstream
Tssr74663 transcription start site region 74663 1281 bp upstream
Tssr74664 transcription start site region 74664 747 bp upstream
Tssr74665 transcription start site region 74665 421 bp upstream
Tssr74666 transcription start site region 74666 362 bp upstream
Tssr74667 transcription start site region 74667 334 bp upstream
Tssr74668 transcription start site region 74668 131 bp upstream
Tssr74669 transcription start site region 74669 117 bp upstream
Tssr74670 transcription start site region 74670 106 bp downstream
Tssr74671 transcription start site region 74671 149 bp downstream
Tssr74672 transcription start site region 74672 162 bp downstream
Tssr74673 transcription start site region 74673 307 bp downstream
Tssr74674 transcription start site region 74674 336 bp downstream
Tssr74675 transcription start site region 74675 345 bp downstream
Tssr74676 transcription start site region 74676 560 bp downstream
Tssr74677 transcription start site region 74677 585 bp downstream
Tssr74678 transcription start site region 74678 617 bp downstream
Tssr74679 transcription start site region 74679 641 bp downstream
Tssr74680 transcription start site region 74680 659 bp downstream
Tssr74681 transcription start site region 74681 686 bp downstream
Tssr74682 transcription start site region 74682 700 bp downstream
Tssr74683 transcription start site region 74683 898 bp downstream
Tssr74684 transcription start site region 74684 1001 bp downstream
Tssr74685 transcription start site region 74685 1027 bp downstream
Tssr74686 transcription start site region 74686 1259 bp downstream
Tssr74687 transcription start site region 74687 1313 bp downstream
Tssr74688 transcription start site region 74688 1417 bp downstream
Tssr74689 transcription start site region 74689 1486 bp downstream
Tssr74690 transcription start site region 74690 1907 bp downstream
Tssr74691 transcription start site region 74691 1950 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory