About   Help   FAQ
rs224245308 SNP Detail
Summary
  • ID
    rs224245308
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44128032 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TCTAC CTCAGCCCCT GCCCTTCCCT
Y
CTTTATCTTC ACCTCACTTG TCTCC                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
LG/J
SM/J
ss322198929 CHEV_7_51733978 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs224245308 SNP C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128032 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2224 transcription start site region 2224 1229 bp downstream
Tssr2225 transcription start site region 2225 1189 bp downstream
Tssr2226 transcription start site region 2226 663 bp downstream
Tssr2227 transcription start site region 2227 403 bp upstream
Tssr2228 transcription start site region 2228 1470 bp upstream
Tssr2229 transcription start site region 2229 1746 bp upstream
Tssr2230 transcription start site region 2230 1925 bp upstream
Tssr66219 transcription start site region 66219 1991 bp downstream
Tssr66220 transcription start site region 66220 1957 bp downstream
Tssr66221 transcription start site region 66221 1938 bp downstream
Tssr66222 transcription start site region 66222 1885 bp downstream
Tssr66223 transcription start site region 66223 1818 bp downstream
Tssr66224 transcription start site region 66224 1795 bp downstream
Tssr66225 transcription start site region 66225 1775 bp downstream
Tssr66226 transcription start site region 66226 1762 bp downstream
Tssr66227 transcription start site region 66227 1721 bp downstream
Tssr66228 transcription start site region 66228 1718 bp downstream
Tssr66229 transcription start site region 66229 1705 bp downstream
Tssr66230 transcription start site region 66230 1685 bp downstream
Tssr66231 transcription start site region 66231 1650 bp downstream
Tssr66232 transcription start site region 66232 1638 bp downstream
Tssr66233 transcription start site region 66233 1616 bp downstream
Tssr66234 transcription start site region 66234 1586 bp downstream
Tssr66235 transcription start site region 66235 1566 bp downstream
Tssr66236 transcription start site region 66236 1539 bp downstream
Tssr66237 transcription start site region 66237 1518 bp downstream
Tssr66238 transcription start site region 66238 1499 bp downstream
Tssr66239 transcription start site region 66239 1448 bp downstream
Tssr66240 transcription start site region 66240 1367 bp downstream
Tssr66241 transcription start site region 66241 1355 bp downstream
Tssr66242 transcription start site region 66242 1275 bp downstream
Tssr66243 transcription start site region 66243 1261 bp downstream
Tssr66244 transcription start site region 66244 1210 bp downstream
Tssr66245 transcription start site region 66245 1148 bp downstream
Tssr66246 transcription start site region 66246 1120 bp downstream
Tssr66247 transcription start site region 66247 1073 bp downstream
Tssr66248 transcription start site region 66248 1032 bp downstream
Tssr66249 transcription start site region 66249 1009 bp downstream
Tssr66250 transcription start site region 66250 990 bp downstream
Tssr66251 transcription start site region 66251 965 bp downstream
Tssr66252 transcription start site region 66252 934 bp downstream
Tssr66253 transcription start site region 66253 906 bp downstream
Tssr66254 transcription start site region 66254 858 bp downstream
Tssr66255 transcription start site region 66255 831 bp downstream
Tssr66256 transcription start site region 66256 782 bp downstream
Tssr66257 transcription start site region 66257 771 bp downstream
Tssr66258 transcription start site region 66258 728 bp downstream
Tssr66259 transcription start site region 66259 692 bp downstream
Tssr66260 transcription start site region 66260 585 bp downstream
Tssr66261 transcription start site region 66261 564 bp downstream
Tssr66262 transcription start site region 66262 557 bp downstream
Tssr66263 transcription start site region 66263 545 bp downstream
Tssr66264 transcription start site region 66264 521 bp downstream
Tssr66265 transcription start site region 66265 478 bp downstream
Tssr66266 transcription start site region 66266 461 bp downstream
Tssr66267 transcription start site region 66267 424 bp downstream
Tssr66268 transcription start site region 66268 408 bp downstream
Tssr66269 transcription start site region 66269 372 bp downstream
Tssr66270 transcription start site region 66270 337 bp downstream
Tssr66271 transcription start site region 66271 305 bp downstream
Tssr66272 transcription start site region 66272 253 bp downstream
Tssr66273 transcription start site region 66273 235 bp downstream
Tssr66274 transcription start site region 66274 230 bp downstream
Tssr66275 transcription start site region 66275 210 bp downstream
Tssr66276 transcription start site region 66276 190 bp downstream
Tssr66277 transcription start site region 66277 170 bp downstream
Tssr66278 transcription start site region 66278 126 bp downstream
Tssr66279 transcription start site region 66279 81 bp downstream
Tssr66280 transcription start site region 66280 59 bp downstream
Tssr66281 transcription start site region 66281 19 bp downstream
Tssr66282 transcription start site region 66282 2 bp downstream
Tssr66283 transcription start site region 66283 1 bp upstream
Tssr66284 transcription start site region 66284 18 bp upstream
Tssr66285 transcription start site region 66285 33 bp upstream
Tssr66286 transcription start site region 66286 70 bp upstream
Tssr66287 transcription start site region 66287 88 bp upstream
Tssr66288 transcription start site region 66288 124 bp upstream
Tssr66289 transcription start site region 66289 172 bp upstream
Tssr66290 transcription start site region 66290 233 bp upstream
Tssr66291 transcription start site region 66291 262 bp upstream
Tssr66292 transcription start site region 66292 300 bp upstream
Tssr66293 transcription start site region 66293 318 bp upstream
Tssr66294 transcription start site region 66294 339 bp upstream
Tssr66295 transcription start site region 66295 624 bp upstream
Tssr66296 transcription start site region 66296 757 bp upstream
Tssr66297 transcription start site region 66297 800 bp upstream
Tssr66298 transcription start site region 66298 825 bp upstream
Tssr66299 transcription start site region 66299 894 bp upstream
Tssr66300 transcription start site region 66300 901 bp upstream
Tssr66301 transcription start site region 66301 925 bp upstream
Tssr66302 transcription start site region 66302 939 bp upstream
Tssr66303 transcription start site region 66303 980 bp upstream
Tssr66304 transcription start site region 66304 988 bp upstream
Tssr66305 transcription start site region 66305 998 bp upstream
Tssr66306 transcription start site region 66306 1032 bp upstream
Tssr66307 transcription start site region 66307 1089 bp upstream
Tssr66308 transcription start site region 66308 1142 bp upstream
Tssr66309 transcription start site region 66309 1163 bp upstream
Tssr66310 transcription start site region 66310 1201 bp upstream
Tssr66311 transcription start site region 66311 1278 bp upstream
Tssr66312 transcription start site region 66312 1294 bp upstream
Tssr66313 transcription start site region 66313 1315 bp upstream
Tssr66314 transcription start site region 66314 1323 bp upstream
Tssr66315 transcription start site region 66315 1343 bp upstream
Tssr66316 transcription start site region 66316 1402 bp upstream
Tssr66317 transcription start site region 66317 1414 bp upstream
Tssr66318 transcription start site region 66318 1459 bp upstream
Tssr66319 transcription start site region 66319 1482 bp upstream
Tssr66320 transcription start site region 66320 1509 bp upstream
Tssr66321 transcription start site region 66321 1527 bp upstream
Tssr66322 transcription start site region 66322 1547 bp upstream
Tssr66323 transcription start site region 66323 1593 bp upstream
Tssr66324 transcription start site region 66324 1622 bp upstream
Tssr66325 transcription start site region 66325 1652 bp upstream
Tssr66326 transcription start site region 66326 1693 bp upstream
Tssr66327 transcription start site region 66327 1707 bp upstream
Tssr66328 transcription start site region 66328 1723 bp upstream
Tssr66329 transcription start site region 66329 1762 bp upstream
Tssr66330 transcription start site region 66330 1781 bp upstream
Tssr66331 transcription start site region 66331 1795 bp upstream
Tssr66332 transcription start site region 66332 1816 bp upstream
Tssr66333 transcription start site region 66333 1864 bp upstream
Tssr66334 transcription start site region 66334 1876 bp upstream
Tssr66335 transcription start site region 66335 1885 bp upstream
Tssr66336 transcription start site region 66336 1894 bp upstream
Tssr66337 transcription start site region 66337 1912 bp upstream
Tssr66338 transcription start site region 66338 1968 bp upstream
Tssr72199 transcription start site region 72199 1125 bp upstream
Tssr72200 transcription start site region 72200 167 bp upstream
Tssr72201 transcription start site region 72201 322 bp downstream
Tssr72202 transcription start site region 72202 1185 bp downstream
Tssr72203 transcription start site region 72203 1571 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory