rs224253480 SNP Detail

Summary

• ID
  rs224253480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43878697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACCTTT TTGCCGGGGA
  GATACAACAC ACATGTTAAT GCACCCCAGA AAGGGAACCC AGACTGATCC ATAGAACAAT
  TTCCCCAGTG TCTAGCTTGG TGAACCAGTG AGTTCGTCAG GATTGGGGTT CCTAACAGAA
  GTATGGATGA AGGGGTACTC ATAGGAGCAA CTGCGTCACT CCCACACAGC ACCACAGCTC
  Y
  GTGGGTGCGA GCGATGACTC ATTAAAGCCG CAATCCTGGA GCTCTCTGCA CTTTTGTATA
  CATCCTGGCA ATCCAAATCT CTCCTTTGTT CTTCAGTCCT TAGAATCTCC AACCCCCCAC
  CCCGCCCCCA CCCCCGCCCC GCCCCCCGTT GTTTACACTT TTTATACCGC TGAGAAAGAG
  CCCTCAAGAA TCTTCCAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398252296	MGP_WTSI_17_43704755	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224253480					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398252296	MGP_WTSI_17_43704755	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43878697 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	517 bp proximal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	312 bp upstream
Rr527121	regulatory region 527121	within coordinates
Rr527122	regulatory region 527122	474 bp proximal
Tssr144685	transcription start site region 144685	181 bp upstream
Tssr144686	transcription start site region 144686	290 bp upstream
Tssr144687	transcription start site region 144687	346 bp upstream
Tssr144688	transcription start site region 144688	484 bp upstream
Tssr144689	transcription start site region 144689	641 bp upstream
Tssr144690	transcription start site region 144690	676 bp upstream
Tssr144691	transcription start site region 144691	696 bp upstream
Tssr144692	transcription start site region 144692	752 bp upstream
Tssr144693	transcription start site region 144693	800 bp upstream
Tssr144694	transcription start site region 144694	835 bp upstream
Tssr144695	transcription start site region 144695	883 bp upstream
Tssr144696	transcription start site region 144696	900 bp upstream
Tssr144697	transcription start site region 144697	1590 bp upstream
Tssr148130	transcription start site region 148130	698 bp downstream