rs224253659 SNP Detail

Summary

• ID
  rs224253659
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117583090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATGCCCA AGATATTAAT
  TGCACTTCTA AGAGGCATAT TATAGTAGCA AGCATGCAGT CCAGTTTCAA AGTTACAGAG
  CTGGAGAGGA AGTGAAAAAT TATATATTTT TGGTTTTGTT TTTCGAGGCC GAGAACTCAT
  TCAGGCTAGA CTCGATCTCA ATATTCACTT TTATTCACAC TGTTACAATA TGAGAGTGGT
  W
  TTTCTCATCT GCAAACGTCA AATACCAACT CAAAGTCTGT CCACACTGAT TGAAAACGTG
  GACCCCCCAC TTTTACAATG TTACAGGGAT TAAATAGAGC AGACTTGGAA GTCTCTACAG
  AGCTAAGGAT GACACAGAAC GGATCTCCCT GCTTCCACCC ATTGAAGTGT CACATGCCTT
  GCAACTAATG TGTAGTTTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499186	CHEV_10_117184241	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224253659					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117583090 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2238	CpG island 2238	1400 bp distal
Cpgi2239	CpG island 2239	530 bp distal
Gm66856	predicted gene, 66856	within coordinates
Rr439610	regulatory region 439610	1222 bp distal
Rr439611	regulatory region 439611	694 bp distal
Rr439612	regulatory region 439612	344 bp distal
Slc35e3	solute carrier family 35, member E3	827 bp upstream
Tssr99471	transcription start site region 99471	835 bp upstream
Tssr99472	transcription start site region 99472	767 bp upstream