rs224260632 SNP Detail

Summary

• ID
  rs224260632
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48039558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGTGAG GATGGATAAA
  GTTGAAGTTG GTTAACTTCC GAATCTTGGA GCAAACATTA AGGAGGAGTT TGAGCGAGGG
  AGGAAGTAGA AAGAAAAAGA TGAAGGGGAA GAAAAACTAG GAAGAATGGA AAGCGAGAGA
  TGGAGAGGAG AGATAGAGAT TCAGTGGGCG TGCTTGGGGG CAGACTGGCA GAGAGACTGA
  R
  ACACACGGAC AGAGCTAGGA GACACACAGA GAGAGAGAGG TATGGAAGGA GAAAGGGAAG
  AAAGAAGAAG GCAGGGCCCG GGCCTGACAC ATCCACCGCC TTCCACAGGG TCCCCCTGAA
  GAAAATGAAG AGTATCCGGG AGACCATGAA GGAACAAGGT GTCCTCAAAG ACTTTCTGAA
  GAACCACAAG TATGACCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398352929	MGP_WTSI_17_47865582	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224260632					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398352929	MGP_WTSI_17_47865582	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48039558 () rs orientation: forward

Symbol	Name	Function Class
D17Mit201	DNA segment, Chr 17, Massachusetts Institute of Technology 201	1298 bp distal
Pgc	progastricsin (pepsinogen C)	within coordinates
Tssr5147	transcription start site region 5147	117 bp upstream
Tssr5148	transcription start site region 5148	677 bp downstream
Tssr145003	transcription start site region 145003	1785 bp downstream
Tssr145004	transcription start site region 145004	99 bp upstream
Tssr145005	transcription start site region 145005	127 bp upstream
Tssr145006	transcription start site region 145006	136 bp upstream
Tssr145007	transcription start site region 145007	163 bp upstream
Tssr145008	transcription start site region 145008	197 bp upstream
Tssr145009	transcription start site region 145009	214 bp upstream
Tssr145010	transcription start site region 145010	617 bp upstream
Tssr145011	transcription start site region 145011	630 bp upstream
Tssr145012	transcription start site region 145012	642 bp upstream
Tssr145013	transcription start site region 145013	661 bp upstream
Tssr145014	transcription start site region 145014	1447 bp upstream
Tssr145015	transcription start site region 145015	1509 bp upstream
Tssr145016	transcription start site region 145016	1520 bp upstream
Tssr145017	transcription start site region 145017	1965 bp upstream
Tssr145018	transcription start site region 145018	1977 bp upstream
Tssr148459	transcription start site region 148459	163 bp downstream
Tssr148460	transcription start site region 148460	184 bp downstream
Tssr148461	transcription start site region 148461	223 bp downstream
Tssr148462	transcription start site region 148462	242 bp downstream
Tssr148463	transcription start site region 148463	645 bp downstream
Tssr148464	transcription start site region 148464	723 bp downstream
Tssr148465	transcription start site region 148465	1488 bp downstream
Tssr148466	transcription start site region 148466	1501 bp downstream
Tssr148467	transcription start site region 148467	1996 bp downstream