rs224275683 SNP Detail

Summary

• ID
  rs224275683
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96513267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCGGGCC GCTCCCGTCG
  TCCGCGGCCG CCCGCAGGCC TGCGTCGGAG GGAGGCCGGA AACTCCGCGC GCCCCCGGCC
  GCGCCCCGGG CTCCCGCGTC CAGGCCGCGC TCCAGGCAGC GCCCCTCGCG CCGCGCCGGT
  CCGGTCCGCG CGTGCAGGTC CTCACCCCGC TCGCTCCGAG GGGGAGCCCC GACCCGCGCC
  S
  GGCAGTCGGT CGACGCGGCG CCTCCCCCCA ACACACCCCC ATCCAGTCTC ACCAGTCCCG
  GGCGGCCGCC GGTGCCGCCA CCCCCGCGCG TGCCCGCCGC CCACCCTCCG CGCCGCCCCG
  GGGGTCCCCT CAGCCCCGGC CCCGCTTACA GATCCTGCCG CGCAGGCTCT GCAGCACTCG
  GACCTCACGA CTGTCCTCGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378580462	MGP_WTSI_9_96531633	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224275683					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378580462	MGP_WTSI_9_96531633	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96513267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22167	CpG island 22167	within coordinates
Rasa2	RAS p21 protein activator 2	within coordinates
Rr684997	regulatory region 684997	393 bp proximal
Tssr86611	transcription start site region 86611	184 bp downstream
Tssr90973	transcription start site region 90973	569 bp upstream
Tssr90974	transcription start site region 90974	314 bp upstream
Tssr90975	transcription start site region 90975	18 bp upstream
Tssr90976	transcription start site region 90976	273 bp downstream