rs224287317 SNP Detail

Summary

• ID
  rs224287317
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:33866155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACGTATCT ATGTGTCTAT
  AATGTGTGTA CATGCATATA TATGTGTATA TGTGTGTATT TATTTGGTAT GTGCATGTGT
  GTGCCTGGGT GTCTGTGTAT AGGTGTGTAT GTATGTGTCT GTGCTGTCTA TGTGTATATA
  TATATGCATA TATGTGTATG CATGTTTGTG AGTGTGCATA TGTGTGGTAT ATGTATGTTT
  G
  TGTATGTATG TGTGTGTGCT GTATATGTGT GTAGTATGTG TGGGTTCTAA GGAGCTAGCC
  AGGTGGCAAT ATTCTTTTTT TGGTCTAGTC TGACCGTCTA GGTAGAAGTG AGACCTGGAA
  GCAAGTTCCT GGTCTAGAAC TCTTCCAGTA TATATGTATG CTCACACACA CAGGTGTGAA
  CACACCTGTA TGCTCACACT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LG/J	LP/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382943011	MGP_WTSI_11_33816155	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LG/J	LP/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224287317					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382943011	MGP_WTSI_11_33816155	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:33866155 () rs orientation: forward

Symbol	Name	Function Class
Kcnip1	Kv channel-interacting protein 1	within coordinates
Rr444858	regulatory region 444858	1372 bp proximal
Rr444859	regulatory region 444859	1605 bp proximal
Tssr3460	transcription start site region 3460	777 bp upstream