rs224294048 SNP Detail

Summary

• ID
  rs224294048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85871481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCGCAAAC CAGCTCTCCC
  TAGGCCAGCT CCGGTCCCAA GTCCACCTGG GCCACTTGTT CCCGCCCCCT CCCTCAGCCC
  AGCTCCAGGA TTGGGTTGTT TTTGTCAGTC CTCGTTCTGA TTGGCTACGC TGGCTCAGTT
  CGAGCAGGCG ATAGGGAGTG AACTCCTTTG CTGCCAATCA GCAGTTGCCG CCGCCTGAGC
  Y
  TCTTCCTGCT ACGCCGCTCA CGCGGTAAAC CCTTCTGTCG AGCGTGGCGG AACTCTGAGT
  TTGGAGTCAG TCTTTTAGGG GTGGGGAAAA CGCAGAGAGA AAAAGGAGCC AAGAAACCTT
  CTGGTGACAG CCTGGGTTGG CTCTGGTGTC TGAGCGCGCC GTGGTGACGC CATCCGTCAG
  CGCCCGCAGC CGAGCGTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386744749	MGP_WTSI_12_87165657	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224294048					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386744749	MGP_WTSI_12_87165657	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85871481 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4904	CpG island 4904	within coordinates
Erg28	ergosterol biosynthesis 28	157 bp upstream
Rr265707	regulatory region 265707	1680 bp distal
Rr265708	regulatory region 265708	within coordinates
Tssr114435	transcription start site region 114435	59 bp downstream
Tssr114436	transcription start site region 114436	211 bp upstream
Tssr117107	transcription start site region 117107	202 bp upstream
Tssr117108	transcription start site region 117108	152 bp upstream
Tssr117109	transcription start site region 117109	138 bp upstream
Tssr117110	transcription start site region 117110	138 bp downstream
Ttll5	tubulin tyrosine ligase-like family, member 5	within coordinates