rs224298570 SNP Detail

Summary

• ID
  rs224298570
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116551360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTGAGGA AAAAACAAAG
  GCTTTTTGTT CAGACACCAT ACTCTCCACT TCTGTTCTGA TTTGGAATCA CTGACTGCTG
  CAGATTTGAG GAGGATCTCA CTATAGAGGA TAAAACAAAT TGGGTGTAGT TGTTTAATCC
  CAGTAATCAG GAGGCAGAGG CAACTGAATT TGAAGCCAGC CTGTTCCAGG ACAACCAGAG
  Y
  TACCTAATCG TGTTTCAAAA GAAAAAATAA TTTTTCTTTT TAAATTTTAA TTTTTTTTTA
  TTTTGTTTTT TCTTATTAGG TATTTATTTC ATTTACATTT CCAAAGCTAT CCCAAAAGTC
  CTCCACCCGC TTCCCCACCC ACCCACTCCC ACTTTTTGGC CCTGACATTC CCCTGTACTG
  AGGCATATAA AGTTTGCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277806	CHEV_4_116366768	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224298570					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116551360 () rs orientation: forward

Symbol	Name	Function Class
Prdx1	peroxiredoxin 1	within coordinates
Tssr38561	transcription start site region 38561	418 bp downstream
Tssr38562	transcription start site region 38562	308 bp downstream
Tssr38563	transcription start site region 38563	203 bp downstream
Tssr38564	transcription start site region 38564	68 bp downstream
Tssr38565	transcription start site region 38565	35 bp downstream
Tssr38566	transcription start site region 38566	1856 bp upstream