rs224313110 SNP Detail

Summary

• ID
  rs224313110
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7351706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAACTCA TGGTCCTAAG
  TCATCTTTCT GAATGAATGA ATGAACGAAT GAATGAATGA ATAAAATCAT TTCCAACTCC
  TAGATCTACA TTCTAATTTT ACTGTTAATC AGGTTTCCTA GAACATAGGA AATGTTTAGG
  AAGCATCTTT TACTAAACTC AGGTGTCATA AACAGTGAGA AATGTAGTGT ACCCTGTGTT
  Y
  TCCTCATCCA GTGGCACAGA AACCACTGTG TGCTTCACAA GTGAGTAAAC AGAATCCACA
  AGGTGAACCA AACAAATTAG GTGGTTGAAC CAAGATTCAT ATCCCAGCTG CTTGGCTCTA
  ACTACACATT ATTAAAAGTA AAGTGGGACC TTTAATCTTA TTTAGAATCA CAGGTAGAAA
  CATTCACACC AGAATACATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560292	MGP_WTSI_9_7351706	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224313110					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560292	MGP_WTSI_9_7351706	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7351706 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	1837 bp upstream
Tssr83703	transcription start site region 83703	1975 bp downstream
Tssr83704	transcription start site region 83704	1941 bp downstream
Tssr83705	transcription start site region 83705	1679 bp downstream
Tssr83706	transcription start site region 83706	1652 bp downstream
Tssr83707	transcription start site region 83707	1630 bp downstream
Tssr83708	transcription start site region 83708	1612 bp downstream
Tssr83709	transcription start site region 83709	1589 bp downstream
Tssr83710	transcription start site region 83710	1072 bp downstream
Tssr83711	transcription start site region 83711	590 bp downstream
Tssr83712	transcription start site region 83712	267 bp upstream
Tssr83713	transcription start site region 83713	669 bp upstream
Tssr83714	transcription start site region 83714	841 bp upstream
Tssr83715	transcription start site region 83715	893 bp upstream
Tssr83716	transcription start site region 83716	1164 bp upstream
Tssr83717	transcription start site region 83717	1205 bp upstream
Tssr83718	transcription start site region 83718	1225 bp upstream
Tssr83719	transcription start site region 83719	1251 bp upstream
Tssr83720	transcription start site region 83720	1280 bp upstream
Tssr83721	transcription start site region 83721	1532 bp upstream
Tssr83722	transcription start site region 83722	1734 bp upstream
Tssr83723	transcription start site region 83723	1858 bp upstream
Tssr88066	transcription start site region 88066	1583 bp upstream
Tssr88067	transcription start site region 88067	1274 bp downstream
Tssr88068	transcription start site region 88068	1322 bp downstream
Tssr88069	transcription start site region 88069	1769 bp downstream