rs224313466 SNP Detail

Summary

• ID
  rs224313466
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75062827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGACCACT CTCCTTAGAC
  TCCCTGATCT TCTCTGCGGT TTCCACCATC TGACCGGTAC CTTTCCTCCT GTGACCCAGT
  CAAGAAGCCT TCCAAAACTC CCAGGCTTCT CCACCCCTCT TTCCCCAGCT CCTAGATGTC
  AAAGTCCGAG GTGCACTCTA CTCCCCTCCT AAACCGGTCC AGTTTCTTGC CTCACCCCCC
  M
  CCCCCCCCCC ACACACACAC CAGGAGAGAG CGAGGATACC ACGGTGGCCA AATGGGAGTG
  ATACCATCGC GGGGCATCTT CTGGCGTCAG AGGACTGTAG GGTCTAGGGA ATGAGCAGTG
  TGGTTTGGGG CTGCCAAGGG AGGACCCCTG CGGTCCAGGA GAAAAGAACT GAGATCCTAG
  GACTCGCAAA GCCCCGGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	RF/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss383894015	MGP_WTSI_11_74985503	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	C	A	A	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	RF/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs224313466					SNP	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	C	A	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383894015	MGP_WTSI_11_74985503	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75062827 () rs orientation: forward

Symbol	Name	Function Class
1700016P03Rik	RIKEN cDNA 1700016P03 gene	7 bp upstream
Cpgi3252	CpG island 3252	1078 bp distal
Cpgi3253	CpG island 3253	499 bp distal
Cpgi3254	CpG island 3254	75 bp proximal
Mir132	microRNA 132	1681 bp upstream
Mir212	microRNA 212	1387 bp upstream
Mirc19	microRNA cluster 19, including Mir212 through Mir132	1387 bp proximal
Rr402719	regulatory region 402719	997 bp upstream
Rr451076	regulatory region 451076	1992 bp distal
Rr451077	regulatory region 451077	1330 bp distal
Rr451078	regulatory region 451078	within coordinates
Rr451079	regulatory region 451079	1212 bp proximal
Rr451080	regulatory region 451080	1713 bp proximal
Tssr102928	transcription start site region 102928	443 bp upstream
Tssr102929	transcription start site region 102929	470 bp upstream
Tssr102930	transcription start site region 102930	552 bp upstream