rs224314972 SNP Detail

Summary

• ID
  rs224314972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44389663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGGAGGGA GGGTGTCCAG
  TCCGGGGGTG GGAGTGAAGT CATGGTTTCC AGAAACTCAG ACCCTTGTCC TTGTCCTAGC
  TGGAGAGGCT ATAGAGTTCT CTGGTTCAGA TGAGTAGGTC TCTTTTCTAA GCAGTGAAAG
  CCAAGTGGGG TGGTCACTGC GCTGGAACCC CTGGGACAAG CTTTAGTGGA GACTGTTCAC
  R
  TAGCTTCAAA ATCCAGACTT CCGCCTCCCT GCAGCCATTT ATCTGTCAAG GGCTTCAGCC
  AGAGGGAGGG AGGAAGGTAG CCCACCAGTG AAGGGAAGAC GACAGGATGG GAGCAGGAGG
  TAGGCAGTTA AGACAGGGTT CGAAAGCGGA TGGCTTTCGG CAGCTTTCAG GTACCCGCTT
  TGCGTGTCGT TTCTCCTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377411520	MGP_WTSI_9_44286449	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224314972					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377411520	MGP_WTSI_9_44286449	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44389663 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	74 bp proximal
Cpgi21660	CpG island 21660	790 bp proximal
Cpgi21661	CpG island 21661	1541 bp proximal
Gm10023	predicted gene 10023	within coordinates
Gm22540	predicted gene, 22540	1851 bp upstream
Gm47204	predicted gene, 47204	within coordinates
Rr368728	regulatory region 368728	1710 bp upstream
Rr677665	regulatory region 677665	within coordinates
Rr677666	regulatory region 677666	372 bp distal
Rr677667	regulatory region 677667	104 bp proximal
Rr677668	regulatory region 677668	996 bp proximal
Rr677669	regulatory region 677669	1421 bp proximal
Rr677670	regulatory region 677670	1884 bp proximal
Tssr89164	transcription start site region 89164	1358 bp downstream
Tssr89165	transcription start site region 89165	1386 bp downstream