rs224320637 SNP Detail

Summary

• ID
  rs224320637
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155923886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAAAGAA ATCTGGACCA
  CAATGCCATC ATGTTGTCCC CAGGGAGCCC ACTATGGTCC CAGAGAAGGG CATAGTAAAA
  TCACCCTCAG TCAAAGTGAA ATCAGAAGAC ACCGGATCTG GCAGGGAGAA TACAAGAAGG
  TGGGGGTAGG GGTGGTGGTG GGGGTGGGGG TGGTGGGGTA GGGGAGCAGC CCAGGTTCTC
  Y
  GGCCTGGCTG ATCACATAGG AGGATGTCAG CGCAGAGGAT GCAGATCAAA CACCAGTTCT
  GTCGAAACTC AGGAAGTTTA CCAGATGCTT GGCACCCGCT TGGCCTCAGG AATCTTCACA
  TCCAGGCCTC GTCTTCTGTC CCAGGACTGA GCTACTGCTC CTCCCCAAGA CTGACCAGTG
  ACTGGCCGAG CCTCTACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363804801	MGP_WTSI_4_155213538	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224320637					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363804801	MGP_WTSI_4_155213538	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155923886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	1383 bp proximal
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	251 bp upstream
Mxra8os	matrix-remodelling associated 8, opposite strand	63 bp downstream
Rr398927	regulatory region 398927	1755 bp upstream
Tssr40724	transcription start site region 40724	246 bp upstream
Tssr40725	transcription start site region 40725	264 bp upstream
Tssr40726	transcription start site region 40726	295 bp upstream
Tssr40727	transcription start site region 40727	340 bp upstream
Tssr40728	transcription start site region 40728	398 bp upstream
Tssr40729	transcription start site region 40729	1672 bp upstream
Tssr40730	transcription start site region 40730	1692 bp upstream
Tssr40731	transcription start site region 40731	1717 bp upstream
Tssr40732	transcription start site region 40732	1739 bp upstream
Tssr40733	transcription start site region 40733	1983 bp upstream
Tssr44980	transcription start site region 44980	1599 bp downstream
Tssr44981	transcription start site region 44981	1665 bp downstream