rs224323535 SNP Detail

Summary

• ID
  rs224323535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59905097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCCCCC TTGTGTTCTC
  ACCTCTACTT GGAATGGGTC CTCTCACCTC TAGTCTCTCC TGAGTTTCCT TAAATGGTAG
  TTCATTCACT AGGTATATGC ACTGTAGGCT TTATTTTATC GAGCCTTAAC CTCTCCATAT
  CTTAGCTTTT CATGGTTGTA CAACACCACC TTCTTTTTTT CTTTCTTTTT TTTTTTTTTT
  Y
  TTTTGGTTTT TTTGAGACAG GGTTTCTCTG TGTAGTCCTG GCTGTCCTGG AACTCACTTT
  GTAGACCAGG CTGGCCTCGA ACTCAGAAAT CCGCCTGCCT CTGCCTCCCA AGTGCTGGGA
  TTAAAGGCGT GCACCACCAT GCCCGGCTAA CACTACCTTC TTAAATGTGT ATTTGTTATT
  TGTTGATATT ATAAATTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	AKR/J	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CZECHII/EiJ	DBA/1J	I/LnJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349794981	MGP_WTSI_1_59922782	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	AKR/J	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CZECHII/EiJ	DBA/1J	I/LnJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224323535					SNP	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349794981	MGP_WTSI_1_59922782	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59905097 () rs orientation: forward

Symbol	Name	Function Class
Bmpr2	bone morphogenetic protein receptor type 2	within coordinates
Tssr6906	transcription start site region 6906	1407 bp upstream