rs224325605 SNP Detail

Summary

• ID
  rs224325605
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78292790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGTGATC CAGCCCTGGG
  GAAGGAGAGA CAGGTAGATC CCTAGGCTCA GTGACCAGCC AGCCAAGGTG AGTCCTAGGC
  CATGGGAAGT CCCCCATCCC AAAAATGATA TAAAGTTAAT AAAATGGCTG GTGCCTGGGG
  CCCCATCTGA GATCTGAGAT TGTTCTCTGC CCCACCCCAC CACCTTCACA CAAGCGCGCG
  T
  GCGCACGCAC ACACACGCAC ACACACACAC ACACACACAC ACACAGGTTG GAAGTTCCAA
  TATACGACAC GTGACTCAGG AACCCTCACA TACCAACATG AATCGCCCAT ACCATGTCAT
  CTCTGCTCTC TGACTCCCAA ACCAGAGCTG AGGAGGCAAA ATTCCCAAGA ATGATGTCAG
  TAAAGGGGCT ACTGCTTCCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394653338	MGP_WTSI_15_78239020	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224325605					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394653338	MGP_WTSI_15_78239020	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78292790 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7286	CpG island 7286	1645 bp distal
Cpgi7287	CpG island 7287	1282 bp proximal
Mpst	mercaptopyruvate sulfurtransferase	within coordinates
Rr505259	regulatory region 505259	1779 bp distal
Rr505260	regulatory region 505260	1244 bp distal
Rr505261	regulatory region 505261	902 bp proximal
Tssr131944	transcription start site region 131944	1858 bp downstream
Tssr131945	transcription start site region 131945	1794 bp downstream
Tssr131946	transcription start site region 131946	1123 bp upstream
Tssr131947	transcription start site region 131947	1149 bp upstream
Tssr131948	transcription start site region 131948	1170 bp upstream
Tssr131949	transcription start site region 131949	1320 bp upstream
Tssr131950	transcription start site region 131950	1364 bp upstream
Tssr131951	transcription start site region 131951	1689 bp upstream