rs224338124 SNP Detail

Summary

• ID
  rs224338124
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8106685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGGCCGGA CGGGCGGAGC AGCAGACAGG
  CAGGGCGGAG GCGCAGTCTG CACCATGGCG TATCCCGGGC ACCCTGGCGC GGGCGGAGGG
  TACTACCCAG GCGGGGTAAG TGCAGCGGAC GAGGGCACAG CAGCCTCTGG TCTCCCGAGA
  Y
  TGGAAGGCGC CACGGACGAG CGGGAGGAGG CGTCGCGGGC GGTCCCAGAT GCTCCCTGCG
  AGCTCGCCTG GACCCTGATG TCCAGCCTTG GCTCCATTTT TCTTCCCCAT CTCTTCCAAG
  GGCCTTTCCA GGGCCCACCG GTGGGTGGGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321459855	CHEV_5_8056685	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224338124					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8106685 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15530	CpG island 15530	within coordinates
Gm15730	predicted gene 15730	1132 bp downstream
Rr607089	regulatory region 607089	148 bp distal
Rr607090	regulatory region 607090	16 bp proximal
Rr607091	regulatory region 607091	1368 bp proximal
Sri	sorcin	within coordinates
Tssr45106	transcription start site region 45106	1571 bp downstream
Tssr45107	transcription start site region 45107	134 bp downstream
Tssr45108	transcription start site region 45108	100 bp downstream